Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05696 ATGGCAGCCATCAGAAGAATCGTCGGCTACAACAATTCCGTATCTCCCTTTCTTCTCACTTTCCGCAGAGCCATTTCTTTCAAGCTTTTCATCGGAGGACTCTCTTTTCACACAACAGAGAAAACCTTATCAGAAGCATTCTCAAATTATGGACAAGTTATAGAAGCCAAAGTTGTAACTGATAGGGTGTCAGAGAAATCTAAAGGGTATGGTTTTGTTACTTTTGCTTCACAAGATGAAGCTGAGAATGCCATAGCTGAGATGAATGAAAAGGCACTGAACGGACGTGTTGTCTTCGTCGATTATGCGAAACCGGATACTAAACGAAGTATGGGAATGCCAATTGCAAGAGGGCCTCCTGAAGTTCTGAACAAACAAGAGATAGTAGATTCTCCTCATGACACATGA 408 0.4191 MAAIRRIVGYNNSVSPFLLTFRRAISFKLFIGGLSFHTTEKTLSEAFSNYGQVIEAKVVTDRVSEKSKGYGFVTFASQDEAENAIAEMNEKALNGRVVFVDYAKPDTKRSMGMPIARGPPEVLNKQEIVDSPHDT 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05696 135 Gene3D - 21 112 IPR012677 -
Vivi6g05696 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Vivi6g05696 135 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 24 112 - -
Vivi6g05696 135 SMART rrm1_1 28 101 IPR000504 GO:0003723
Vivi6g05696 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 98 IPR000504 GO:0003723
Vivi6g05696 135 SUPERFAMILY RNA-binding domain, RBD 26 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05696 Vivi-Chr6 163309538 163310902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05696 14 111 Eukaryotic Initiation Factors Gene Family AT2G23350 28.846 3.26e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05696 - - lja:Lj1g3v4721740.1 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05696 6 163309538 163310902 Vivi6g05696 6 163309538 163310902 ECH