Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05691 ATGCAGATCTTCGTAAAAGAGTCGTCCGATACCATCGACAATGTGAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCGGACCAGCAACGTCTCATTTTCGCCGGCAAACAGCTCGAAGACGGCCGCACTCTAGCTGACTACAACATCCAGAAGGAATCCACTCTTCACCTTGTTCTCCGTCTCCGCGGTGGCGCCTTGCATTGCTCTCAAATGGCGAAGCTCATCTTCCTCTTTCTCACTCTCATTCCAGTTCTCTGCACTTCCTTCTCTCCTGATAAACCCTCAGATCGTCGCATCCTTGTCTTAGTTGATGATTTTGCAGTCAAATCTTCACATTCTCTATACTTCAAATCTCTCCAATCTCGCGGATTCGATCTCGATTTCAAGCTCGCCGATGACCCCAAAATCGCGCTCCAGAGATACGGACAGTATCTCTATGATGGATTAGTTTTGTTTTCCCCAACAATTGAACGTTTTGGTGGATCTATTGATGCTGCTGCTATTTTGGATTTTGTTGATTCCGGTCATGATTTGATAGTTGCTGCTGATAATAATGCATCTGATTTAATCAGGGAAATTGCTACTGAGTGTGGAGTGGACTTTGATGAGGATTATACTGCTGTTGTTGTAGATCATGCGGGATATGCAGTCTCCTCTACTGAAGGGGATCATACATTGATTGCTAGCGATGATTTCATTAAGTCTGACGTGATCTTGGGAAGCAAAAAAATTGAGGCTCCGGTGCTTTTCCAGGGAATTGGGCATTCATTGAATCCTTCTAATAGCCTGGTGTTGAAAGTTCTATCAGCATCTCCTACAGCTTTTTCTGCCAACCCAAAATCTAAGTTGACAAGTCCTCCATCACTACTTGGATCTTCAATCTCATTAGTTTCAGTTATACAGGCTAGAAACAATGCTAGGATATTGATCTCTGGCTCATTGAGCATGTTCAGCAACCGATTTTTCAATTCAGGTGTGCAGAAGGCAGGCAGTCCAACCAAACACGTCAAGTCAGGCAATGAGCAGTTCTTGACTGAACTTAGCAAATGGGTTTTGCATGAAAGAGGTCACCTCAAGGCGGTGAATGTGCAACACCACAAAGTCGGGGAAACTAATGAACCATCGATCTACAGGATCAATGATGATTTGGAATACTCTGTTGAAATTTATGAGTGGTCTGGGACAACATGGGAACCTTATGTTGCTGATGATGTTCAAGTTCAATTTTACATGATGAGCCCCTATGTCTTGAAGAATTTATCAAATGACAAGAAGGGTCGTTATTTCACATCGTTTAAGGTTCCTGATGTCTATGGGGTTTTCCAGTTCAAAGTTGAGTATAATCGACTTGGATATACAAGCTTATCTTTAGCAAAGCAGATTCCTGTTCGTCCTTTCAGACACAACGAATACGAGAGATTTATCGCATCTGCCTATCCTTATTATGGGGCAGCGTTTTCGATGATGGCAGGTTTCTTTGTCTTCAGTGCTGTTCATCTTTACAACAAGTAG 1515 0.429 MQIFVKESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGALHCSQMAKLIFLFLTLIPVLCTSFSPDKPSDRRILVLVDDFAVKSSHSLYFKSLQSRGFDLDFKLADDPKIALQRYGQYLYDGLVLFSPTIERFGGSIDAAAILDFVDSGHDLIVAADNNASDLIREIATECGVDFDEDYTAVVVDHAGYAVSSTEGDHTLIASDDFIKSDVILGSKKIEAPVLFQGIGHSLNPSNSLVLKVLSASPTAFSANPKSKLTSPPSLLGSSISLVSVIQARNNARILISGSLSMFSNRFFNSGVQKAGSPTKHVKSGNEQFLTELSKWVLHERGHLKAVNVQHHKVGETNEPSIYRINDDLEYSVEIYEWSGTTWEPYVADDVQVQFYMMSPYVLKNLSNDKKGRYFTSFKVPDVYGVFQFKVEYNRLGYTSLSLAKQIPVRPFRHNEYERFIASAYPYYGAAFSMMAGFFVFSAVHLYNK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05691 504 ProSitePatterns Ubiquitin domain signature. 16 41 IPR019954 -
Vivi6g05691 504 SUPERFAMILY Ubiquitin-like 1 66 IPR029071 -
Vivi6g05691 504 CDD Ubl_ubiquitin 1 65 - -
Vivi6g05691 504 ProSiteProfiles Ubiquitin domain profile. 7 65 IPR000626 GO:0005515
Vivi6g05691 504 Gene3D - 1 74 - -
Vivi6g05691 504 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT 72 504 IPR005013 GO:0005789|GO:0018279
Vivi6g05691 504 PRINTS Ubiquitin signature 21 41 IPR019956 -
Vivi6g05691 504 PRINTS Ubiquitin signature 42 63 IPR019956 -
Vivi6g05691 504 FunFam Polyubiquitin-C 1 65 - -
Vivi6g05691 504 SMART ubq_7 1 61 IPR000626 GO:0005515
Vivi6g05691 504 Pfam Ubiquitin family 7 63 IPR000626 GO:0005515
Vivi6g05691 504 Pfam Oligosaccharyltransferase 48 kDa subunit beta 99 504 IPR005013 GO:0005789|GO:0018279
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05691 Vivi-Chr6 163200092 163204324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05691 1 72 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 80.723 2.21e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05691 K12670 - gmx:100803270 761.911