Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05681 ATGTCAATACAAGAAACGACGTCGTTATGGTGGACTACTCACCAACAACAACAACGACAAGAACGACAAGAGAAGACCAAGGGTCATCAACAAGAGGAAGAAGGTGAATTAGACGACGACGTCGTTTTAGAGTCAATGATGAAACTGAAAACGGCTTCAGCTTCGGTGTCTGCGTCGGCGTCTGTATCAGAAGAAGAGAAAGAAGCTATGTTTGAGAAACCCTTAACACCAAGCGACGTTGGGAAGCTGAACCGTCTCGTGATACCGAAGCAACACGCGGAGAGATATTTCCCACTCGACTCAGAAGAAACGAAGGGACTTCTACTGAGTTTCGACGACGAGTCAGGGAAGTGTTGGAGGTTCCGTTACTCGTATTGGAACAGTAGTCAGAGTTACGTTCTTACCAAAGGTTGGAGTCGTTATGTGAAAGATAAACGTCTTGATGCCGGCGACGTCGTTTTGTTTCAGAGACACCGTACACATCCTCACCGGTTTTTTATCTCTTGGAGGCGCCGCCATGCTACTGCTGCCGCAACAGCGACGGTTCATGCTGGCCCTAGTACTGACGGCAATGGCGCTGTTGCTTCTGTTGGGTGGTCCAGAGGACTCTACCCTGCGCATCATCCTTATCCTACGCATCATCACCCTTTCTCATATCATGCTGCAGGTGAAGGGACCCAAAGTCAGGACACAAACGCACCTTGTGGAAACAATTCGAGTACTTCCAGGGTGCTGAGGCTGTTTGGAGTGAACATGGAATGCCAACCTGATAATAATATTAATGATTCCGAAGCGGCAGAATGCTCTTATAATATGTCACAAGGACCACAATTCTACCACCACCTCCACCGTCAACCACCGTCAAACACTCACCATCACATGCTACGTCAACAACAACCATAG 903 0.4817 MSIQETTSLWWTTHQQQQRQERQEKTKGHQQEEEGELDDDVVLESMMKLKTASASVSASASVSEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEETKGLLLSFDDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRTHPHRFFISWRRRHATAAATATVHAGPSTDGNGAVASVGWSRGLYPAHHPYPTHHHPFSYHAAGEGTQSQDTNAPCGNNSSTSRVLRLFGVNMECQPDNNINDSEAAECSYNMSQGPQFYHHLHRQPPSNTHHHMLRQQQP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05681 300 SMART B3_2 71 173 IPR003340 GO:0003677
Vivi6g05681 300 SUPERFAMILY DNA-binding pseudobarrel domain 68 172 IPR015300 -
Vivi6g05681 300 Gene3D - 65 182 IPR015300 -
Vivi6g05681 300 ProSiteProfiles B3 DNA-binding domain profile. 71 173 IPR003340 GO:0003677
Vivi6g05681 300 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 15 264 IPR044800 GO:0003700
Vivi6g05681 300 FunFam B3 domain-containing protein 64 182 - -
Vivi6g05681 300 MobiDBLite consensus disorder prediction 277 300 - -
Vivi6g05681 300 MobiDBLite consensus disorder prediction 1 17 - -
Vivi6g05681 300 CDD B3_DNA 70 160 IPR003340 GO:0003677
Vivi6g05681 300 Pfam B3 DNA binding domain 71 172 IPR003340 GO:0003677
Vivi6g05681 300 MobiDBLite consensus disorder prediction 1 39 - -
Vivi6g05681 300 MobiDBLite consensus disorder prediction 18 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05681 Vivi-Chr6 163185985 163187839 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05681 64 266 RAV Transcription Factor Family AT5G06250 50.698 1.04e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi6g05681 B3 4e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05681 K09287 - gmx:100781153 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05681 6 163185985 163187839 Vivi6g05681 6 163185985 163187839 ECH