Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05653 ATGAAGTTGCAGGGGACCAGTGGCGTTTGTTATGATACTATTGCTTTTGAAAAAATGAAGAGATTGAGATTGTTGCAACTTGATCATGTACAATTCATAGGAGATTATGGGTGTTTTCCAAGGAACATGAAATGGCCTTCTTGGCAAGGATTTCCTTTAAAATACATGCCAGAAAACTTTTATCAGAATAATCTAGTTGCTATGGACTTAAAACACAATAATCTTACACAAGTTTGGAAGAAGCCTCAGATTTTGAAAAACACAAATGATTTAAAAGAGGAGTTAAAGAAATGCATGAGAGGTAAAAGGGATTTATTTACGAGTGGAGATTTCTTGAATGACAAGATAAAACTAGGAACAGGTGGCTTTAAAGAAAGATATTATAAAGAGAAAAGAAGTAGTAAGTTTTTCCCTGCAGCTACTTATTTTGTGCAGAAGTACACTGACGGATTATTGTGGGTTCTTGAGTACTATTTTTCAGGAGTTGCTTCATGGACATTGTACTCTTAG 510 0.3451 MKLQGTSGVCYDTIAFEKMKRLRLLQLDHVQFIGDYGCFPRNMKWPSWQGFPLKYMPENFYQNNLVAMDLKHNNLTQVWKKPQILKNTNDLKEELKKCMRGKRDLFTSGDFLNDKIKLGTGGFKERYYKEKRSSKFFPAATYFVQKYTDGLLWVLEYYFSGVASWTLYS 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05653 169 PANTHER 5'->3' EXORIBONUCLEASE 72 168 IPR027073 -
Vivi6g05653 169 Pfam Xrn1 helical domain 67 168 IPR041412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05653 Vivi-Chr6 162795196 162796891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05653 16 107 WRKY Transcription Factor Family AT4G12020 33.663 9.16e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05653 - - vvo:131615207 361.303