Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05647 ATGGCAGATAAGTACTCCCACCCTCGCAACAGAAGCTGTTGTTGCTGTCTCTTTACCTTCTTCTGCAAGCTTCTGGCTTCACTCATCGTCCTCTTCGGTCTCATAATCCTTATCTTCTACCTCATTGTTCAACCCCACACCTTCAAATTCTATGTCACGAAAGCCGAATTAACCCAGTTCGACTATACCGACAGCACACTACATTACAACATGGTGCTCAATTTCACTGCCCGCAATCCAAACAAAAAACTCGGTATCTATTACGATAAAGTTGAGGCTCATGCATTCTATGAAGGGGCAAGGTTTGCAAATGTCGATGTGATCACACACATGAACTCTTTCCGCCAAGACAAAAAAAGCAGTGACCCTATGAGTGGTGTTTTCTCGGGACAACAGTTGTTGATGCTCCATAGTGATCAAGTGTCTGAATTCAACAAAGATAAGAGTGTTGGAGTTTATGATATCTATGTGAAACTCTACTTCAGGATTAGGTTCAAACTCGGAGACTCGATTTCTCACAATTACAAGCCCAAAGTCAAGTGTGACATCAATGTTTCGTTAAATTCTAGGAATAATGCAACTTTTACCTTTACTAGGGTTTTGCCTACCAAGTGCGATGTTCTGTTCTAG 630 0.4175 MADKYSHPRNRSCCCCLFTFFCKLLASLIVLFGLIILIFYLIVQPHTFKFYVTKAELTQFDYTDSTLHYNMVLNFTARNPNKKLGIYYDKVEAHAFYEGARFANVDVITHMNSFRQDKKSSDPMSGVFSGQQLLMLHSDQVSEFNKDKSVGVYDIYVKLYFRIRFKLGDSISHNYKPKVKCDINVSLNSRNNATFTFTRVLPTKCDVLF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05647 209 Pfam Late embryogenesis abundant protein 75 181 IPR004864 -
Vivi6g05647 209 PANTHER OS05G0367900 PROTEIN 11 189 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05647 Vivi-Chr6 162699928 162700916 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05647 42 201 SNARE and Associated Proteins AT1G32270 31.481 1.01e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05647 - - psat:127129872 278.485