Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05640 ATGAACCACCGCACAACAACACTCCTCCTCCTCCTCCTTCTACCCTCTCTTGTCCTCACAATCACCCACCCAAACGACCTCAAAATCCTCAACCAATTTAGAAACAACCTCGACAACCCCGAACTCCTACAATGGCCAAAACAATCCCCTACCAACGACCCATGTTCCACCCCACCATGGAAATTCATCTTCTGCCACAACGACAGAGTCACTCAGATTCAAACCAAAAACCTTAACCTCTCCGGCACCTTACCTCACAACCTCAACGAACTCACAGAACTCTTCAACCTAGGTCTCCAGAACAACAACCTCCACGGTCCCTTACCCTCGCTAAACGGCTTAACGAATCTCAAATACGCTTTCTTCGACAACAACGACTTCGATTCAATCCCAAACGATTTCTTCCAAGGGTTAACAAGTTTGGAAACTCTCGCATTGGATAACAATAACCTCAATGTTTCTACAAATGGGTGGAATTTTCCTTCTTCTCTGCTGGATTCGGCTCAGTTGACAACTCTTTCTTGTATGAGCTGTAATTTGGTTGGTCCTTTGCCGGATTTTCTTGGGAAAATGAACTCTTTATCGTTTTTGAAGCTTTCTGAGAACAGTTTAAGGGGTGAGATTCCGTTGAGTCTTAATGGGTCTGGTTTGCAGACTCTGTGGTTGAATAACCAGAAGGGTGAGGGTGAGTCACTTTCTGGGAGTATTGATGTTGTTGCTACTATGGTTTCTTTGACTAGTTTGTGGCTTCATGGGAATCGGTTCACCGGTTCGATTCCGGAGAATATTGGAGACTTGGTTTCTCTTAAGGAGCTTAATCTTAATGGGAATGATCTTGTTGGGGTTGTTCCTAGTTCTTTAGGGGATATGGTGTTGGATAATCTTGATTTGAATAATAACAGGTTTATGGGTCCAATTCCAAAGTTTAAAGCTTTGAAAGTTAGTTATGGTAACAATGATTTTTGTTTGAATGAGACTGGTGTTGTTTGTTCTTTTGAGGTTATGGCTCTTTTAGGGTTTTTGGGTGGAGTGAATTATCCTTCAAATTTGGTTGATTCATGGATTGGGAATAACCCTTGTGAAGGACCTTGGTTGGGGATAAAATGCAATGCTGATGGGAAAGTTTCGATGATTAATTTGCAGCGTTTTAATCTTAGTGGTAGTTTGAGTCCTTCTGTTGCGAATTTAGGTTCTTTGGTTGAGATTAGATTGGAGGGTAATCATATAAATGGTGTTGTGCCTAGTAATTGGACTAGTTTGATGAATCTGAAGTTGTTGGATCTGAGTGATAATAATATTTCTCCTCCTTTGCCGGTTTTTAGTAATGGATTGAAACCTATGGTTGATGGGAATTCTTTGTTGAATGGTGGTGGAGCGAAAAGTCCTTCCTCGGGGAAAAACAGTACGTCGGGTGGATCGGGGAGTACCGGTGATGATACGAAAGGAGGGTCGGATTCAAGTTCGGGTGATTCAGTTGAAACAAAGAAATCCAAAAGGAAAAGCGTGGTTTTGATTGTAGCTCCCATTGCTGGTGTTGCGGCTGCTGCTTTTCTGTTGATTCCGCTTTATGCGTATTGTTTTAGGAGGACAAAAGATGGATTTCAGGCTCCAAGTTCACTTGTGGTTCACCCGAGAGATCCGTCTGATTCGGACAGTGCTGTAAAGATAGCTGTTGTTAATAATACCAATGGAAGTGTTTCCACTTTGACTGGCAGCGGGACTGGGAGTAGAAACAGCAGTGCGTTTGGGGAGTCTCATGTCATTGAAGCTGGAAATCTTGTGATATCAGTTCAAGTTCTAAGAAACGTGACAAAGAATTTCGCCCCTGAGAATGAGCTCGGTCGTGGTGGATTCGGAGTTGTTTATAAGGGAGAGTTGGACGACGGGACTAAGATTGCAGTAAAAAGAATGGAAGCAGGTGTGATAACCAATAAAGCCTTGGATGAATTTCAAGCTGAAATTGCAGTTCTGTCGAAAGTTCGACATCGACATCTAGTGGCCCTAATAGGTTATTCCATTGAAGGTAACGAGAGGATTCTTGTGTATGAGTATATGCCACAAGGTGCTCTCAGTCAGCATCTTTTCCATTGGAAAAGCCTCGGATTCGAGCCTCTCTCGTGGAAGAGGAGGCTCAACATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATACTCTGGCTCAACAGAGCTTCATTCATAGGGATCTTAAGTCCTCAAATATTTTACTCGCTGATGATTTTAGAGCTAAAGTCTCGGATTTCGGATTGGTAAAACTCGCACCTAATGGCGAAAAATCTGTAGTGACTAAACTTGCTGGGACTTTTGGATACTTGGCTCCTGAATATGCAGTGACAGGAAAAATCACAACCAAAGTAGATGTTTTCAGTTTCGGCGTCGTGTTAATGGAGCTCTTGTCTGGATTGATGGCACTTGACGAGGATAGACCTGAGGAAAGCCAATACTTAGCAGCATGGTTCTGGAACATAAAATCCGATAAGAATAAACTAATGGCTGCAATTGACCCAACTCTCGAAATAAATGACGAAACATTCGAGAGTGTCTCAATTATTGCAGAGCTAGCCGGCCACTGCACAGCTAGAGAACCAAACCAAAGGCCAGAAATGGGCCATGCTGTCAACGTCCTCGCACCGCTCGTTGAAAAATGGAAACCGTTTGACGACGACCCCGACGAGTATTCCGGCATCGACTACAGTCTTCCACTTAACCAAATGGTGAAGGGTTGGCAGGAGGCGGAAGGAAAAGACACAAGTTATATGGACTTAGAAGACAGTAAGAGTAGTATCCCTGCGAGACCTACTGGATTTGCAGATTCTTTTACTTCGGCCGATGGCCGGTGA 2862 0.435 MNHRTTTLLLLLLLPSLVLTITHPNDLKILNQFRNNLDNPELLQWPKQSPTNDPCSTPPWKFIFCHNDRVTQIQTKNLNLSGTLPHNLNELTELFNLGLQNNNLHGPLPSLNGLTNLKYAFFDNNDFDSIPNDFFQGLTSLETLALDNNNLNVSTNGWNFPSSLLDSAQLTTLSCMSCNLVGPLPDFLGKMNSLSFLKLSENSLRGEIPLSLNGSGLQTLWLNNQKGEGESLSGSIDVVATMVSLTSLWLHGNRFTGSIPENIGDLVSLKELNLNGNDLVGVVPSSLGDMVLDNLDLNNNRFMGPIPKFKALKVSYGNNDFCLNETGVVCSFEVMALLGFLGGVNYPSNLVDSWIGNNPCEGPWLGIKCNADGKVSMINLQRFNLSGSLSPSVANLGSLVEIRLEGNHINGVVPSNWTSLMNLKLLDLSDNNISPPLPVFSNGLKPMVDGNSLLNGGGAKSPSSGKNSTSGGSGSTGDDTKGGSDSSSGDSVETKKSKRKSVVLIVAPIAGVAAAAFLLIPLYAYCFRRTKDGFQAPSSLVVHPRDPSDSDSAVKIAVVNNTNGSVSTLTGSGTGSRNSSAFGESHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVITNKALDEFQAEIAVLSKVRHRHLVALIGYSIEGNERILVYEYMPQGALSQHLFHWKSLGFEPLSWKRRLNIALDVARGMEYLHTLAQQSFIHRDLKSSNILLADDFRAKVSDFGLVKLAPNGEKSVVTKLAGTFGYLAPEYAVTGKITTKVDVFSFGVVLMELLSGLMALDEDRPEESQYLAAWFWNIKSDKNKLMAAIDPTLEINDETFESVSIIAELAGHCTAREPNQRPEMGHAVNVLAPLVEKWKPFDDDPDEYSGIDYSLPLNQMVKGWQEAEGKDTSYMDLEDSKSSIPARPTGFADSFTSADGR 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05640 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 732 744 IPR008271 GO:0004672|GO:0006468
Vivi6g05640 953 MobiDBLite consensus disorder prediction 456 490 - -
Vivi6g05640 953 SMART serkin_6 607 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05640 953 Pfam Protein kinase domain 610 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05640 953 FunFam Receptor-like kinase TMK4 24 327 - -
Vivi6g05640 953 MobiDBLite consensus disorder prediction 451 494 - -
Vivi6g05640 953 Gene3D Ribonuclease Inhibitor 332 455 IPR032675 -
Vivi6g05640 953 ProSitePatterns Protein kinases ATP-binding region signature. 613 635 IPR017441 GO:0005524
Vivi6g05640 953 FunFam Leucine-rich repeat receptor-like kinase 332 456 - -
Vivi6g05640 953 Gene3D Transferase(Phosphotransferase) domain 1 685 899 - -
Vivi6g05640 953 FunFam receptor protein kinase TMK1 685 902 - -
Vivi6g05640 953 CDD STKc_IRAK 613 886 - -
Vivi6g05640 953 Gene3D Ribonuclease Inhibitor 24 329 IPR032675 -
Vivi6g05640 953 PANTHER OSJNBA0070M12.3 PROTEIN 8 953 - -
Vivi6g05640 953 ProSiteProfiles Protein kinase domain profile. 607 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05640 953 FunFam receptor protein kinase TMK1 569 684 - -
Vivi6g05640 953 Gene3D Phosphorylase Kinase; domain 1 571 684 - -
Vivi6g05640 953 SUPERFAMILY L domain-like 333 442 - -
Vivi6g05640 953 SUPERFAMILY L domain-like 22 310 - -
Vivi6g05640 953 Pfam Leucine rich repeat N-terminal domain 24 65 IPR013210 -
Vivi6g05640 953 Pfam Leucine rich repeat N-terminal domain 335 370 IPR013210 -
Vivi6g05640 953 SMART LRR_typ_2 138 161 IPR003591 -
Vivi6g05640 953 SMART LRR_typ_2 114 137 IPR003591 -
Vivi6g05640 953 SMART LRR_typ_2 242 265 IPR003591 -
Vivi6g05640 953 SMART LRR_typ_2 266 289 IPR003591 -
Vivi6g05640 953 SMART LRR_typ_2 396 419 IPR003591 -
Vivi6g05640 953 SMART LRR_typ_2 420 442 IPR003591 -
Vivi6g05640 953 MobiDBLite consensus disorder prediction 923 953 - -
Vivi6g05640 953 SUPERFAMILY Protein kinase-like (PK-like) 585 883 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05640 Vivi-Chr6 162583723 162587110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05640 80 888 Receptor kinase-like Gene Family AT5G07280 31.114 1.85e-80 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vivi6g05640 Pkinase 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05640 K00924 - gmx:100305366 1399.03