Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05632 ATGGCAACGTACTTTCATGGTAATTCTGAAATTCAATCAGGTGGCGGCGGCGGTGGTGCCGACGGACTTCAAACACTTGTTCTGATGAATCCAGGTTATATTCAATACTCAGACACGACACAGCAACCACAACCACAGCCTCAGCCGCCATCTCACGCCGCGTCGGGTAATTATGTTTTTCTCAACTCCACCGCGGCTGAAAACAACTCATTCTCACCTCACGCGCCACCTTCCAACACACAACAATTTGTCGGCATCCCACTCAACCACCAGCATCAGCATCAGCACCAACATCAAATCCACGGCCATCATGAAGTTGTTCCTTCCTTGCATGGCTTCCTTCCTCACATGCAGTACAATCAGTGGAACACAATTGACCCTTCCACGGCGGCGCGTGAAACTCCACGCGCTCAGCAAGGTTTGTCTCTAAGCCTATCTTCGCAGCCGCAACGGTTTATGTCCTTTCGAGAAGGTCAGGCGGGTGGTATGTCCGGTGGCGGATCGCCGTCTCCGGCTTCTGGTATTACCAATAACGGGAATTCCGGGATTCAGGTTCTGAGTTCGAAGTATTTGAGGGCGGCGCATGAGCTTTTGGAAGAGGTTGTGAATGTGAATAGTGGTGTTGAGTTGGGGAAGAAGAACAAGATGAATATTGGAGAATCATCGGGAGTTGGTAGTGGAGGAGATGGTTCAATTATTGGTGGCGGCGAGGGAAGTGGTGGGAAGCGTAGCTCTGAGCTATCAACGGCGGAGAGACAAGAAATACAGATGAAGAAAGCTAAGCTAATTACAATGCTTGATGAGGTGGAGCAAAGATACAGACAGTACCACCACCAAATGGAGGTAGTGGTTTCATCCTTCGAGCAAGCAGCCGGAATCGGTTCTGCCCGAGCCTACACTGCCCTCGCACTGCAAACAATCTCGAAGCAATTTCGGTGTTTGAAAGATGCAATAACCGGACAAGTTAGAGCTATAAATAAGAGCTTAGGAGAAGAGGATTGTTTTGGTGGTAAAATAGAAGGTTCAAGGCTGAAGTATGTTGATCATCAATTGCGTCAACAACGCGCTTTACAACAGTTGGGAATGATCCAGCATAATGCTTGGAGACCCCAAAGAGGATTGCCTGAAAGATCTGTTTCCGTTCTTCGTGCTTGGCTCTTCGAACATTTCCTTCACCCTTATCCTAAGGACTCAGACAAGCACATGCTTGCAAAACAAACAGGACTTACTAGGAGTCAGGTTTCGAATTGGTTTATAAATGCTCGTGTTCGACTTTGGAAGCCGATGGTGGAAGAAATGTACTTGGAAGAAATGAAAGAGAATGAACTGAATGCATCAGATGATAAATCAAGCAAGAGCAATGAAGATTCTTCAATGAAAATAACACCCTCTCAAGAGAAAGCTCTTACTTCTGAAACAGATCCTAAAGGTTACAATTCCACACAAGACATTTCGAGAAACCAAGAAACTCAAATAATTTCTGTTTCTAGACCACAAACATCGCCACTTGTTGGAAATGTTCGAAACAATTCAGGTTTCAGTTTCATAGGATCGTCGGAACTAGAAGGTATACCTCAAGCAAGTCCTAAGAAACCGAGGAACCATGAACTCATGCATACGCCAAATAGTTTCATTGATGTTAAACACAATGAGGCGAGTAATGAGCTGAAATTTGGTGATGAGAGACAAAGTAGAGACGGTTACTCTTTCATGGGAAACCAAACAAATTTCATGGGTGGATTTGGACAATACCCGATTGGCGATATTGGTAGGTTTGATTCAGAACAATTCGCGCCAAGGTTTTCTAGTAACGGTGTTTCACTCACTCTTGGTCTCGATTCAATACAAGGAAATCATCAAACATTTTTACCAAACCAAAACATTCAACTAGGAAGAAACATTGATATAAGCGAAACGAATGAGTTTGGTTCCATAAACACTTCTTCTCCTCAATATGAGAGTATCAACATGCAAAATCCGAAAAGGTTCGCTGCGCAATTGTTGCCTGATTTTGTGGCATAA 2022 0.4456 MATYFHGNSEIQSGGGGGGADGLQTLVLMNPGYIQYSDTTQQPQPQPQPPSHAASGNYVFLNSTAAENNSFSPHAPPSNTQQFVGIPLNHQHQHQHQHQIHGHHEVVPSLHGFLPHMQYNQWNTIDPSTAARETPRAQQGLSLSLSSQPQRFMSFREGQAGGMSGGGSPSPASGITNNGNSGIQVLSSKYLRAAHELLEEVVNVNSGVELGKKNKMNIGESSGVGSGGDGSIIGGGEGSGGKRSSELSTAERQEIQMKKAKLITMLDEVEQRYRQYHHQMEVVVSSFEQAAGIGSARAYTALALQTISKQFRCLKDAITGQVRAINKSLGEEDCFGGKIEGSRLKYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKENELNASDDKSSKSNEDSSMKITPSQEKALTSETDPKGYNSTQDISRNQETQIISVSRPQTSPLVGNVRNNSGFSFIGSSELEGIPQASPKKPRNHELMHTPNSFIDVKHNEASNELKFGDERQSRDGYSFMGNQTNFMGGFGQYPIGDIGRFDSEQFAPRFSSNGVSLTLGLDSIQGNHQTFLPNQNIQLGRNIDISETNEFGSINTSSPQYESINMQNPKRFAAQLLPDFVA 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05632 673 MobiDBLite consensus disorder prediction 130 149 - -
Vivi6g05632 673 MobiDBLite consensus disorder prediction 441 483 - -
Vivi6g05632 673 Gene3D - 371 450 - -
Vivi6g05632 673 MobiDBLite consensus disorder prediction 456 483 - -
Vivi6g05632 673 SMART prehox3 180 320 IPR006563 -
Vivi6g05632 673 FunFam BEL1-like homeodomain protein 9 371 433 - -
Vivi6g05632 673 MobiDBLite consensus disorder prediction 36 56 - -
Vivi6g05632 673 Coils Coil 252 272 - -
Vivi6g05632 673 CDD homeodomain 368 429 IPR001356 GO:0003677
Vivi6g05632 673 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 455 - -
Vivi6g05632 673 MobiDBLite consensus disorder prediction 157 179 - -
Vivi6g05632 673 MobiDBLite consensus disorder prediction 214 251 - -
Vivi6g05632 673 Pfam Homeobox KN domain 385 424 IPR008422 GO:0003677|GO:0006355
Vivi6g05632 673 ProSiteProfiles 'Homeobox' domain profile. 365 428 IPR001356 GO:0003677
Vivi6g05632 673 SUPERFAMILY Homeodomain-like 369 435 IPR009057 -
Vivi6g05632 673 MobiDBLite consensus disorder prediction 441 455 - -
Vivi6g05632 673 Pfam Associated with HOX 185 319 IPR006563 -
Vivi6g05632 673 SMART HOX_1 368 432 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05632 Vivi-Chr6 162422777 162427328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05632 1 673 Homeobox Transcription Factor Family AT2G35940 47.884 4.70e-166 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi6g05632 POX 7e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05632 - - gmx:100810901 892.878