Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05628 ATGGATCATGATGAGATTGATGTTCCTACCTATTTTCTCTGCCCCATATCATTAGAAATCATGAAGGATCCAGTAACTGTCTCAACCGGCATAACCTACGACCGAGAAAGCATCGAAAAATGGCTATTCTCAAGGAACAACAAAACATGTCCGATCACCAAACAACAGCTATCAGATTACACCGATCTAACACCAAACCACACACTTCGAAGACTCATTCAAGCATGGTGTACACTAAACGCTTCACAAGGAATCGAAAGGATCCCAACTCCAAAACCACCGATCAACAAAATCCAAATCTCGAAACTCATCAAAGAAGCTTCTCATTCAAATCTCACCATTCAAATTAAATGTCTCAAAAAACTTAGATCATTTGCTTCTGGAAGTGAAACAAATAAACGTTGCATGGAAGATGCTGGTGTTGTTGAGTTCTTAGCTTCTATTGTGATAAACAATAGTAGTAACATCGATTCCACGGCTTTATTATTATCGGAGACTAACGTTAATCCGATTGATGAAGCATTAAGCATACTTCATAACCTTCATGTATCTGAAGCTGGACTGAAGAATCTACTAGCTTTAAATAACAGCGAATTTATAGAATCTTTAACAAAAGTTATGCAGAAAGGTTTCTTCGAATCACGAGCTTATGCAGTTTTCTTACTAAAATCCATGACAGAAGTAGCTGAACCAGTGCAGTTACTCCATCAAAAAACCGCGTTATTAGTCGAACTGGTGCAAGTTTTGAAAGATCAAATATCACAAAAGGTATCAAAAGCGGCACTTCAGACACTAATCCATCTCTGTCCATGTGGAAGAAACAGAATCAAAGGTGTTGAAGCAGGAACAGTTCCTGTCTTGATAGAACTTCTGTTAGAGAATTGCAAAGACAGAAAACCAAATGAGATGATGTTGGTTTTGTTGGAATGTCTCTGTCAGTGTGCAGAAGGAAGAGCTGAACTTTTGAGACATGGTGCAGGAATGGCTGTTGTTTCGAAGAAGATTCTTAGGGTTTCGTCGGTCGCCAATGATAGAGCTGTTCGGATTCTGTTGTCTGTTTCGAAATTCTCTGCAACTCATAATGTTGTTCAAGAAATGCTTAAGCTTGGTGTTGTTGCTAAACTGTGTTTGGCTCTTCAAGTTGATTGTGGAAGCAAGACTAAGGAGAAAGCTAGGGAGATTCTTAAGATGCATGCTAGGGTTTGGAGAGATTCTCCATGCATACCTAGTAATTTGCTTTCTTCATACCCTAATTATATCTGA 1263 0.388 MDHDEIDVPTYFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSRNNKTCPITKQQLSDYTDLTPNHTLRRLIQAWCTLNASQGIERIPTPKPPINKIQISKLIKEASHSNLTIQIKCLKKLRSFASGSETNKRCMEDAGVVEFLASIVINNSSNIDSTALLLSETNVNPIDEALSILHNLHVSEAGLKNLLALNNSEFIESLTKVMQKGFFESRAYAVFLLKSMTEVAEPVQLLHQKTALLVELVQVLKDQISQKVSKAALQTLIHLCPCGRNRIKGVEAGTVPVLIELLLENCKDRKPNEMMLVLLECLCQCAEGRAELLRHGAGMAVVSKKILRVSSVANDRAVRILLSVSKFSATHNVVQEMLKLGVVAKLCLALQVDCGSKTKEKAREILKMHARVWRDSPCIPSNLLSSYPNYI 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05628 420 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Vivi6g05628 420 PANTHER WDSAM1 PROTEIN 4 409 IPR045185 GO:0061630
Vivi6g05628 420 FunFam RING-type E3 ubiquitin transferase 1 86 - -
Vivi6g05628 420 Pfam U-box domain 8 78 IPR003613 GO:0004842|GO:0016567
Vivi6g05628 420 SUPERFAMILY RING/U-box 3 81 - -
Vivi6g05628 420 Gene3D - 96 405 IPR011989 -
Vivi6g05628 420 SUPERFAMILY ARM repeat 100 385 IPR016024 -
Vivi6g05628 420 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Vivi6g05628 420 CDD RING-Ubox_PUB 9 59 IPR045210 -
Vivi6g05628 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05628 Vivi-Chr6 162298112 162299717 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05628 1 417 U-box Gene Family AT2G35930 58.294 2.42e-173 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05628 - - mtr:25499491 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05628 6 162298112 162299717 Vivi6g05628 6 162298112 162299717 ECH