Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05626 ATGGATCATGATGAGATCGATGTTCCTACCTATTTTCTCTGTCCCATATCATTAGAAATCATGAAGGATCCAGTAACTGTCTCAACCGGTATAACCTACGACCGAGAAAGCATCGAAAAATGGCTATTCTCAAGGAACAACAAAACATGTCCGATCACCAAACAACAGCTATCAGATTACACTGATCTAACACCAAACCACACACTTCGAAGACTCATTCAAGCATGGTGTACACTAAACGCTTCACAAGGAATCCAAAGGATCCCAACTCCGAAACCACCTATCAACAAAATCCAAATCACTAAACTCATCAAAGAAGCTTCTCATTCAAATCTCACCATTCAAATTAAATGTCTCAAAAAACTTAGATCATTTGCTTCTGGAAGCGAAACAAATAAACGTTGCATGGAAGAAGCTGGTGTTGTTGAGTTCTTAGCTTCTATTGTGATAAACAATAGTAGTAACATAGATTCCGCGTCTTTATTATTATCTGAGTCTAACGTTAATCCGGTTGATGAAGCATTAAGCATACTTCATAACCTTCATGTATCTGAAGCTGGACTGAAGAATCTACTAGCTTTCAAAAACGGCGAATTTATCGAATCATTAACAAAAGTTATGCAGAAAGGTTTCTTCGAATCACGAGCTTACGCAGTTTACTTACTAAAGTCTATGACAGGAGTAGCTGAATCAGTTCAGTTAGTGCATCAAAAAACTGCATTATTTGTCGAACTGGTGCAAGTTTTGAAGGATCAAATATCACAAAAGGTATCAAAAGCGGCACTTCATACACTAATCCATCTCTGTCCATGTGGAAGAAACAGAATCAAAGGTGTTGAAGCAGGAACAGTTCCTGTCTTGATAGAACTTCTGTTAGAAAATTGCAAAGACAGAAAACCAAATGAAATGATGCTGGTTTTGTTGGAATGTCTCTGTCAGTGTGCAGAAGGAAGAGCTGAGCTTCTGAGACATGGTGCAGGACTAGCTGTTGTTTCGAAGAAGATTCTTAGGGTTTCGTCGGTCGCCAACGATAGAGCGGTTCGGATTCTGTTGTCTGTTTCGAGATTCTCTGCAACTCATAATGTTGTTCAAGAAATGCTTAAGCTTGGTGTTGTTGCTAAACTGTGTTTGGCTCTTCAAGTTGATTGTGGAAGCAAGACTAAGGAGAAAGCTAGGGAGATTCTTAAGATGCATGCTAGGGTTTGGAGAGATTCCCCATGCATACCTAGTAATTTGCTTTCATCATACCCTAATTATATCTGA 1263 0.3903 MDHDEIDVPTYFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSRNNKTCPITKQQLSDYTDLTPNHTLRRLIQAWCTLNASQGIQRIPTPKPPINKIQITKLIKEASHSNLTIQIKCLKKLRSFASGSETNKRCMEEAGVVEFLASIVINNSSNIDSASLLLSESNVNPVDEALSILHNLHVSEAGLKNLLAFKNGEFIESLTKVMQKGFFESRAYAVYLLKSMTGVAESVQLVHQKTALFVELVQVLKDQISQKVSKAALHTLIHLCPCGRNRIKGVEAGTVPVLIELLLENCKDRKPNEMMLVLLECLCQCAEGRAELLRHGAGLAVVSKKILRVSSVANDRAVRILLSVSRFSATHNVVQEMLKLGVVAKLCLALQVDCGSKTKEKAREILKMHARVWRDSPCIPSNLLSSYPNYI 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05626 420 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Vivi6g05626 420 Pfam U-box domain 8 78 IPR003613 GO:0004842|GO:0016567
Vivi6g05626 420 Gene3D - 96 405 IPR011989 -
Vivi6g05626 420 FunFam RING-type E3 ubiquitin transferase 1 86 - -
Vivi6g05626 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Vivi6g05626 420 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Vivi6g05626 420 CDD RING-Ubox_PUB 9 59 IPR045210 -
Vivi6g05626 420 SUPERFAMILY ARM repeat 100 385 IPR016024 -
Vivi6g05626 420 PANTHER WDSAM1 PROTEIN 4 409 IPR045185 GO:0061630
Vivi6g05626 420 SUPERFAMILY RING/U-box 3 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05626 Vivi-Chr6 162266291 162267965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05626 1 417 U-box Gene Family AT3G52450 57.666 2.98e-173 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05626 - - mtr:25499491 704.901