Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05624 ATGAACGACTTACTCTCCGTCCAAAACGACGACAGTAACGGCCACCACCACCACGTCATCCAGATGGCGGAAACCTCCACCACCACCACCACCACGGTGACTACACTCCATAAATTCTTCGAAGAAGTGGAATCGGTGAAGGAAGAATTGAAAGAGCTGGAGAAACTCCACGTGAGTCTGAGAACCTCGCATGGGAAGAGCAAGAGCCTTCACAGCGCCACCGCGGTGAAGGAGCTTCGTTCTCGAATGGACTCCGACGTTACTCTGTCGCTAAAGAAAGCTAAACTGGTTAAGGCTCGGTTGGAGTCGCTTGATCGGTCCAATGAAGAGAGCCGGTCGTTGGTTGATTGTGGACCCGGTTCGTCTTCTGATCGAACCCGGTTGGCGGTGGTTGGTGGTTTGAGGAAGAAGTTGAAAGATTCGATGGAGAGGTTTAATGAACTTAGGGAGATGATATCGTTGGAGTATAGAGTGACGGTGCAGCGGAGATACTTTACCGTTACTGGAGAGAAAGCTGATGATCAAACTGTTGATCTCCTCATCTCTACAGGTGAAAGCGAAACATTTTTACAAAAAGCGATACAAGAGCAAGGGAGAGCAACAGTGATGGAGACAATACAAGAGATTGAGGAGAGACATGGTGCTGTGAAAGAGATAGAGAGAAATCTAAATGAGCTACATCAAGTGTTTTTGGACATGTCAGTTATGGTGGAAGGCCAAAGTGAAGAATTGAATGACATTGAGAGCCAAATGAAGCGAGCAAATTCGTACGTTAGGAAAGGTATACAACAAATACATGTTGCTAGGAAGCATCAAAAGAATAGCCGTAAATGGACATGTTTTGCCATTTTAGTACTTCTCATTATCGCTTTGGTTGTAATTCTTCCTATTATTTTAAAAAATAATTAA 909 0.4477 MNDLLSVQNDDSNGHHHHVIQMAETSTTTTTTVTTLHKFFEEVESVKEELKELEKLHVSLRTSHGKSKSLHSATAVKELRSRMDSDVTLSLKKAKLVKARLESLDRSNEESRSLVDCGPGSSSDRTRLAVVGGLRKKLKDSMERFNELREMISLEYRVTVQRRYFTVTGEKADDQTVDLLISTGESETFLQKAIQEQGRATVMETIQEIEERHGAVKEIERNLNELHQVFLDMSVMVEGQSEELNDIESQMKRANSYVRKGIQQIHVARKHQKNSRKWTCFAILVLLIIALVVILPIILKNN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05624 302 PANTHER SYNTAXIN 33 288 IPR045242 -
Vivi6g05624 302 Coils Coil 36 63 - -
Vivi6g05624 302 SMART tSNARE_6 201 268 IPR000727 -
Vivi6g05624 302 Pfam SNARE domain 244 294 IPR000727 -
Vivi6g05624 302 FunFam Syntaxin 132 199 299 - -
Vivi6g05624 302 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 33 163 - -
Vivi6g05624 302 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Vivi6g05624 302 Gene3D - 195 299 - -
Vivi6g05624 302 CDD SynN 38 193 IPR006011 GO:0016020
Vivi6g05624 302 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vivi6g05624 302 SUPERFAMILY t-snare proteins 36 261 IPR010989 GO:0016020|GO:0016192
Vivi6g05624 302 Gene3D - 34 166 - -
Vivi6g05624 302 CDD SNARE_syntaxin1-like 205 265 - -
Vivi6g05624 302 SMART SynN_4 31 157 IPR006011 GO:0016020
Vivi6g05624 302 Pfam Syntaxin 38 240 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05624 Vivi-Chr6 162205997 162208454 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05624 30 280 SNARE and Associated Proteins AT3G11820 65.339 4.56e-119 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05624 K08486 - gmx:100808718 383.645