Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05620 ATGGCTTCTACTACACCTTCTGTTTCCTCTTATATCCCCAACAGAATCTACAACCTTTCATTCACACACTCTTCCATTTCTCTCACCACAAACTTCCCTCAAAGACCCATTTCCCATAAACCCCTCAATCTCATCCTCAAGTCTCAAAGTTTCACTCTTTCCCCTCTCACACTTCAACCTCCATTCGCTGCAGCAGATGGATTTGAAACTACTCAAGACACCACAGTTTCCCAACTAGAGGAACAAAAGCCAGAAACTGAAACTGAAAAAGAACAGGAAACCTCTGATGAACAACAGAAAGAGGAAGAACAGAAAGTGTCAGCCTCAGACGATGCTGGAAGGCTCTATGTTGGAAATTTGCCGTTTTCAATTACTTCTTCTCAGTTGTCTGAGATCTTTGCAGAAGCTGGCACTGTTGTCTCTGTTGAGATGGTGTATCAGCGACTTACAGCCAGGAGCAGAGGATTTGCATTTGTTACAATGAAGAGTGTTGAAGAAGCTGAAGCAGCAATTCAAATGTTTGATGGCTCTCAAATTGGTGGTAGGAGTGCTAAGGTGAACTTTCCAGAAGTGCCTAGAGGAGGTGAAACGTTAGTAATGGAAAAAAAAAATAGAAACAGCAACAGAGGCTTTGTAGACAGTCCTCACAAGATATATGCTGGAAACCTTGGGTGGGCACTGAACTCTCAGGATCTTAGAGATGCCTTTGCTGAACAGCCAGGATTATTGGGTGCTAGAATCAACTATGAGAAGGGCACTGGAAGATCTCGAGGTTTCGGATTTGTTACTTTTGAAACTGCTGAGGATTTACAGGCTGCTATGAATGCTATGAACGGCGTGGAGGTTCAAGGTCGGCCGTTGCGATTGAATTTAGCTACAGAGAGGAAATCTTATTCTCGTCCTCCAGTAATTGAGAAAAGTACAGAGACGAAATCTTCACCTCCTCCTCCGGTAGTTGAGGAAAGTACAGAGACGGAATCTTCACCTCCTCCTCCAGTAATTGAGGAAAGTACAGAGACGGAATCTTCACCTCCTCCTCCAGTAAATGAGGAAAGTTCAGCTAGCAATGTTGATAATTCGGAATTGGTGTCTAGCGCAAGCGCTTGA 1107 0.439 MASTTPSVSSYIPNRIYNLSFTHSSISLTTNFPQRPISHKPLNLILKSQSFTLSPLTLQPPFAAADGFETTQDTTVSQLEEQKPETETEKEQETSDEQQKEEEQKVSASDDAGRLYVGNLPFSITSSQLSEIFAEAGTVVSVEMVYQRLTARSRGFAFVTMKSVEEAEAAIQMFDGSQIGGRSAKVNFPEVPRGGETLVMEKKNRNSNRGFVDSPHKIYAGNLGWALNSQDLRDAFAEQPGLLGARINYEKGTGRSRGFGFVTFETAEDLQAAMNAMNGVEVQGRPLRLNLATERKSYSRPPVIEKSTETKSSPPPPVVEESTETESSPPPPVIEESTETESSPPPPVNEESSASNVDNSELVSSASA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05620 368 SUPERFAMILY RNA-binding domain, RBD 109 189 IPR035979 GO:0003676
Vivi6g05620 368 SMART rrm1_1 114 187 IPR000504 GO:0003723
Vivi6g05620 368 SMART rrm1_1 217 290 IPR000504 GO:0003723
Vivi6g05620 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Vivi6g05620 368 SUPERFAMILY RNA-binding domain, RBD 212 300 IPR035979 GO:0003676
Vivi6g05620 368 CDD RRM2_NsCP33_like 217 292 - -
Vivi6g05620 368 MobiDBLite consensus disorder prediction 72 110 - -
Vivi6g05620 368 Coils Coil 76 96 - -
Vivi6g05620 368 Gene3D - 63 188 IPR012677 -
Vivi6g05620 368 MobiDBLite consensus disorder prediction 303 368 - -
Vivi6g05620 368 Gene3D - 196 300 IPR012677 -
Vivi6g05620 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Vivi6g05620 368 MobiDBLite consensus disorder prediction 80 109 - -
Vivi6g05620 368 MobiDBLite consensus disorder prediction 291 368 - -
Vivi6g05620 368 PANTHER OS02G0815200 PROTEIN 39 296 - -
Vivi6g05620 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Vivi6g05620 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 288 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05620 Vivi-Chr6 161998805 162000760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05620 100 296 Eukaryotic Initiation Factors Gene Family AT3G16380 32.338 1.73e-21 94.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05620 6 161998805 162000760 Vivi4g04210 4 168084720 168086923 PCT