Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05619 ATGGCTTCTACTACACCTTCTGTTTCCTCTTATATCCCCAACAGAATCTACAACCTTTCATTCACACACTCTTCCATTTCTCTCACCACAAACTTCCCTCAAAGACCCATTTCCCATAAACCCCTCAATCTCATCCTCAAGTCTCAAAGTTTCACTCTTTCCCCTCTCACACTTCAACCTCCATTCGCTGCAGCAGATGGATTTGAAACTACTCAAGACACCACAGTTTCCCAACTAGAGGAACAAAAGCCAGAAACTGAAACTGAAAAAGAACAGGAAACCTCTGATGAACAACAGAAAGAGGAAGAACAGAAAGTGTCAGCCTCAGACGATGCTGGAAGGCTCTATGTTGGAAATTTGCCGTTTTCAATTACTTCTTCTCAGTTGTCTGAGATCTTTGCAGAAGCTGGCACTGTTGTCTCTGTTGAGATGGTGTATCAGCGACTTACAGCCAGGAGCAGAGGATTTGCATTTGTTACAATGAAGAGTGTTGAAGAAGCTGAAGCAGCAATTCAAATGTTTGATGGCTCTCAAATTGGTGGTAGGAGTGCTAAGGTGAACTTTCCAGAAGTGCCTAGAGGAGGTGAAACGTTAGTAATGGAAAAAAAAAATAGAAACAGCAACAGAGGCTTTGTAGACAGTCCTCACAAGATATATGCTGGAAACCTTGGGTGGGCACTGAACTCTCAGGATCTTAGAGATGCCTTTGCTGAACAGCCAGGATTATTGGGTGCTAGAATCAACTATGAGAAGGGCACTGGAAGATCTCGAGGTTTCGGATTTGTTACTTTTGAAACTGCTGAGGATTTACAGGCTGCTATGAATGCTATGAACGGCGTGGAGGTTCAAGGTCGGCCGTTGCGATTGAATTTAGCTACAGAGAGGAAATCTTATTCTCGTCCTCCAGTAATTGAGAAAAGTACAGAGACGAAATCTTCACCTCCTCCTCCAGTAATTGAGGAAAGTACAGAGACGGAATCTTCACCTCCTCCTCCAGTAAATGAGGAAAGTTCAGCTAGCAATGTTGATAATTCGGAATTGGTGTCTAGCGCAAGCGCTTGA 1062 0.436 MASTTPSVSSYIPNRIYNLSFTHSSISLTTNFPQRPISHKPLNLILKSQSFTLSPLTLQPPFAAADGFETTQDTTVSQLEEQKPETETEKEQETSDEQQKEEEQKVSASDDAGRLYVGNLPFSITSSQLSEIFAEAGTVVSVEMVYQRLTARSRGFAFVTMKSVEEAEAAIQMFDGSQIGGRSAKVNFPEVPRGGETLVMEKKNRNSNRGFVDSPHKIYAGNLGWALNSQDLRDAFAEQPGLLGARINYEKGTGRSRGFGFVTFETAEDLQAAMNAMNGVEVQGRPLRLNLATERKSYSRPPVIEKSTETKSSPPPPVIEESTETESSPPPPVNEESSASNVDNSELVSSASA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05619 353 SMART rrm1_1 114 187 IPR000504 GO:0003723
Vivi6g05619 353 SMART rrm1_1 217 290 IPR000504 GO:0003723
Vivi6g05619 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Vivi6g05619 353 CDD RRM2_NsCP33_like 217 292 - -
Vivi6g05619 353 MobiDBLite consensus disorder prediction 72 110 - -
Vivi6g05619 353 Coils Coil 76 96 - -
Vivi6g05619 353 Gene3D - 193 300 IPR012677 -
Vivi6g05619 353 Gene3D - 63 188 IPR012677 -
Vivi6g05619 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 183 IPR000504 GO:0003723
Vivi6g05619 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 288 IPR000504 GO:0003723
Vivi6g05619 353 MobiDBLite consensus disorder prediction 303 353 - -
Vivi6g05619 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Vivi6g05619 353 MobiDBLite consensus disorder prediction 291 353 - -
Vivi6g05619 353 MobiDBLite consensus disorder prediction 80 109 - -
Vivi6g05619 353 SUPERFAMILY RNA-binding domain, RBD 109 189 IPR035979 GO:0003676
Vivi6g05619 353 PANTHER OS02G0815200 PROTEIN 39 296 - -
Vivi6g05619 353 SUPERFAMILY RNA-binding domain, RBD 212 300 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05619 Vivi-Chr6 161998804 162000760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05619 100 296 Eukaryotic Initiation Factors Gene Family AT3G16380 32.338 1.42e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05619 - - vvo:131610913 585.104