Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05618 ATGGCTATGCAAACTGTTTATCTGAAAGAACATGAAGGGATTGCACACAATTTTGTGGGGCAATTGTCATCTGGTAATGGTAATTCAGCAACAGTGCCATGGTGGAGTGGCTTTGGATCTCAATCTGTTTATGGAGAGACTGGTGGTGGACAAATCAAATCGTTTTCGTTGGAGCCGTCTTTCGCGGTTGTTGACCAACTTGCTGGAAATAAGCAATCTGGTAGAGGAGGGGCTGAGCATGTGATGGGGAAAGGGCATGGGAATCAGTTTACCATCTTTCCGGACGATTTCAAAATGTCAGGTGATGCACAGAAGCCTCATACAGCCATATCCCTGCAGTCATCACTCCCTGATACCCCGACTCATTTCGAGCTAGGCTTTAGTCAGCCTATGATCTGTACCAAATATCCTTATGCAGATCAATTTTATGGACTCATTTCAGCTTATGGACCTCAAGTACCGGGACGCATAATGCTGCCACTTAACATGACATCTGATGATGGACCGATTTATGTAAACGCTAAGCAGTACCATGGAATCATTAGACGCCGACAGTCCCGTGCCAAAGCTGTTCTTGGTCAGAAATTGATCAAACGTCGCAAGCCCTACATGCACGAGTCTCGTCATCTCCATGCAATGCGGCGACCAAGAGGATGCGGTGGCCGTTTCTTGAACACAAAGAAACCATCCAAAGGAGATGGTAAAAGTGTAAGCAAAGTGCATAAATTCTGCGGTCAACAATTGCAGTGCAGCGGCTCTCCGAGTTCTGAACTCTTTGAATCTGATGTTGGAACTTTAAACTCGTCAAAAGAAACAAACGGTAGCAGTCCGAATATTTCCGGGTCCGAGGTGACTAGTTTATATTCGCGGGGAAATCTTGGCAGCTATCTTGGACCTACTGTCCACTCCTTGGCAGACATGATCGATGGTGGGCGTGGCGTTATCATGCCCACCAAATGGGTTACAGCAGCTGGCAACTGCTGTAACCTTGAAGCTTGA 999 0.4665 MAMQTVYLKEHEGIAHNFVGQLSSGNGNSATVPWWSGFGSQSVYGETGGGQIKSFSLEPSFAVVDQLAGNKQSGRGGAEHVMGKGHGNQFTIFPDDFKMSGDAQKPHTAISLQSSLPDTPTHFELGFSQPMICTKYPYADQFYGLISAYGPQVPGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLGQKLIKRRKPYMHESRHLHAMRRPRGCGGRFLNTKKPSKGDGKSVSKVHKFCGQQLQCSGSPSSELFESDVGTLNSSKETNGSSPNISGSEVTSLYSRGNLGSYLGPTVHSLADMIDGGRGVIMPTKWVTAAGNCCNLEA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05618 332 ProSiteProfiles NF-YA/HAP2 family profile. 166 226 IPR001289 GO:0003700|GO:0006355
Vivi6g05618 332 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 169 223 IPR001289 GO:0003700|GO:0006355
Vivi6g05618 332 Gene3D - 166 228 - -
Vivi6g05618 332 SMART cbf3 165 226 IPR001289 GO:0003700|GO:0006355
Vivi6g05618 332 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 79 285 IPR001289 GO:0003700|GO:0006355
Vivi6g05618 332 MobiDBLite consensus disorder prediction 242 283 - -
Vivi6g05618 332 PRINTS CCAAT-binding transcription factor subunit B signature 169 191 IPR001289 GO:0003700|GO:0006355
Vivi6g05618 332 PRINTS CCAAT-binding transcription factor subunit B signature 200 223 IPR001289 GO:0003700|GO:0006355
Vivi6g05618 332 MobiDBLite consensus disorder prediction 215 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05618 Vivi-Chr6 161985981 161989819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05618 1 331 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.045 6.21e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vivi6g05618 CBFB_NFYA 8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05618 K08064 - gmx:100527677 467.233