Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05586 ATGGCCAATCAACCCGAACCTTCTGATGTTAAGGGAACAAAGAGGGATTTTAGCACTGCCATTCTGGAATGCAAAAAAGCTCCTAATCCTTTGGTGGTTGACGAATCTGTCAACGACGACAATTCTTCTGTAGCTCTTCATCCGGAGACTATGGAAAAACTTCAACTCTTCCACGGCGATACTAAGTTGATTAAGAAACAAGTTGTTGAAGTTCCTAATTGCAGCTGGGAAGATATCGGTGGTCTTGAAAATGTTAAGAGGGAACTCCGAGAAACTATTCAATATCCATTGGAACACTCTGATAAGTTTGACAAGTTTGGAATGGCGCCTTCAAAGGGAGTTTTTATCTATGGTCCTCCTGGTTGTGGTAAAACACTTTTGGCAAAAGCTATTGCCAATGAATGCAAGGTAAACTTCATCAATGTCAAAGGTCCTGAGCTGCTCACAATGTGGTTTGGAGAAAGTGAGGCAAACGTGAGGAAAATTTTTGACAAGGCTTCTGCTTCTGCTCCATGTGTCCTATTCTTCGACGAACTCGACTCCATTGCAACTCAGAGAGCTAGTAGTGTAGGAGATGCTGGTGGTGCTGCTAACAGGGTTTTGAACCAGCTGCTAATAGAAATGGATGGGGTGTCAGCAAAGAAAACCGTGTTCATCATTGGCGCCACTAACCGACCTGACATTATAGATCCAGCTCTTCTGCGTCCAGGGCGTCTAGACCAGGTGATTTATATTCCTCTCCCGGATGAAGATTCCCGTCATCAGATATTTAAAGCTTGCTTGAGAAAATCCCCCATCTCACAAGATGTTGATATTAGAGCTCTTGCAAAGTACACCCAAGGCTTTAGTGGTGCTGATATTACCGAGATTTGCCAGCGTGCATGCAAGTATGCCATTAGAGAGAATATCGAAAAGGACATTGAAAAAGAGAGAAAGAAAAGCGAGAACCCCGAAGCCATCGAAGAGAATGTTGATGAAGTAGCAGAAATTAAGGCAGCTCATTTTGAGGAATCAATGAAGTATGCCCGAAGGAGTGTAAGTGATGCCGACATTTGCAAATACCAGGCATTCGCCCAAACATTGCAGCAATCCGGAGGGTTTGGAACTGAGTTTAAGTTTGCAGGTTCCGGCTCCGGTGGTGCTACTGCTACAGGTGCATCTGATCCACTTATATCTGCTGGCGGAGCTGATGATGATGATCTTGATCTTTACAATGAGAATCGTTTCAATGGTCATCAAATTTTTTACAAAGATTATCTTCTCAATGATCAAACTCTTTACAATGTTCGAATTCGAGACAATGGTCGAATTCCAGACAATGTTGGAATTCTAAAGATTCCTGATCTTCTCAGTGATGAGTTTATGTATGATTCTGATCCTTGA 1383 0.4273 MANQPEPSDVKGTKRDFSTAILECKKAPNPLVVDESVNDDNSSVALHPETMEKLQLFHGDTKLIKKQVVEVPNCSWEDIGGLENVKRELRETIQYPLEHSDKFDKFGMAPSKGVFIYGPPGCGKTLLAKAIANECKVNFINVKGPELLTMWFGESEANVRKIFDKASASAPCVLFFDELDSIATQRASSVGDAGGAANRVLNQLLIEMDGVSAKKTVFIIGATNRPDIIDPALLRPGRLDQVIYIPLPDEDSRHQIFKACLRKSPISQDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERKKSENPEAIEENVDEVAEIKAAHFEESMKYARRSVSDADICKYQAFAQTLQQSGGFGTEFKFAGSGSGGATATGASDPLISAGGADDDDLDLYNENRFNGHQIFYKDYLLNDQTLYNVRIRDNGRIPDNVGILKIPDLLSDEFMYDSDP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05586 460 SUPERFAMILY ADC-like 27 71 IPR009010 -
Vivi6g05586 460 SMART AAA_5 110 249 IPR003593 GO:0016887
Vivi6g05586 460 Gene3D - 8 72 - -
Vivi6g05586 460 ProSitePatterns AAA-protein family signature. 217 235 IPR003960 GO:0005524|GO:0016887
Vivi6g05586 460 Gene3D - 73 247 IPR027417 -
Vivi6g05586 460 Pfam AAA+ lid domain 269 310 IPR041569 -
Vivi6g05586 460 PANTHER AAA-FAMILY ATPASE 64 364 - -
Vivi6g05586 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 359 IPR027417 -
Vivi6g05586 460 FunFam Transitional endoplasmic reticulum ATPase 64 247 - -
Vivi6g05586 460 Gene3D - 251 358 - -
Vivi6g05586 460 CDD RecA-like_CDC48_r2-like 85 245 - -
Vivi6g05586 460 Pfam ATPase family associated with various cellular activities (AAA) 114 247 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05586 Vivi-Chr6 161667803 161670054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05586 64 363 Calmodulin-binding Proteins AT3G56690 41.000 1.79e-76 256