Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05576 ATGGGAAACAACTGTGTTGGATCCAGAAAAACCTCCAAAGATGAATTCATCTTTCCATCTATTAATCTTCTTCCAGCTTCATGGTCATGGTCTCACTCCGTTCAGCAACACCCACCACCCGTTTGCAAAATCGACAACAAAGACTCACAGCCAGTTATCATGTTCAAGAAACATGAACATGCTAGACCAACCAATCCAAAACCTATGATGATGTTGCCGAATATTAAGAGGGTACCGCCAAAAAGTGCTGGACTTAAAGCAGAGTCAGTTTTGCTAACAAACTCTGGTTGTTTTAGTGAGTATTATGAGTTGGGAGATGAACTTGGGAAAGGGCAATATGGTGTAACTTCGCTTTGTTTCGAGAAAGCGACTGGGAAAAGATATGCATGCAAGTGTATTCCTAAGGTGAAGTTGGTGAAAGGAGATGATTTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGTTGGGAGTTCGAATGTGGTATCGATTAAAGGGGCTTATGAGGATTCGGCTGTTGTTTATATTGTTATGGAGTTATGTGAAGGGGGTGAGTTGTTTGATAGGATTGTTCAAAGGGATCATTATACTGAGAGAAAAGCAGCTAAACTTGCTAGGACTATTGTTAGTATAGTTGAGTCTTGTCACTCGCTTGGAGTAATGCATCGTGATCTTAAACCGGAGAATTTTCTTTTTGTTGATGGAGATGAAGATTCAACTCTTAAGGCAATTGATTTTGGAATGTCTGTTTTCTTCAAACCAGGAGAAAAGTTTAGTGATGTAGTAGGAAGTGCTTATTATATTGCACCCGAGATTCTCAGAGAGTGCTATGGTCCAGAAGCTGATGTCTGGAGTGCTGGTGTGATCATATATCTTCTCCTTTGTGGAACAGCTCCCTTTTATGGTGAAATAGATGAAGAGATATTTCATGAGGTTTTGCATGGTAAACTTGATTTCTCTTCGGATCCTTGGCCAAGTATCTCTGAAAGTGCAAAAGACTTGGTTAAGAAGATGCTTGTTAGAGATCCTAGTAAAAGGATAACGGCACATGAAGTTCTTTGCCACCCTTGGATTCAGGTTGATGGAGTTGCTCCAGACAAGCCTCTTGATTCCGCAGTTTTGAGTCGTCTAAAGCAATTTTCTGCTATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCTGAGAATCTCTCTGAAGAAGAAATTTCTGGGTTGAAAGAATTGTTTAAGATGATAGACACTGACAACACTGGTCAAATTACTTTCGAAAAACTCAAGGCTGGACTAAAAATGTTCGGCGCTAATCTCAATGAATTTGAGATTTTTGATCTATTGAATGCTGCAGATGTAGATAATAGTGGCACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATTTTAACAAAGTTGGTAGGGAAGATAATTTAGTTACAGCTTTTTCATATTTTGATAAAGATGGAAGTGGCTACATCACTCAAGATGAGCTTCAAAAAGTTTGTAAAGAATTTGGCATGGAAGATGTCCACTTAGAGGAAATGATCCAAGAAGCTGATCAAAATAATGATGGACAAATAGACTACAACGAATTTGTTGCTATGATGCTGAGAGGCAACGTAGATTTAGGCAATACTGGTTCAAAGTGTAGAAGCACTAGCTTTAACATTGGATTAAGGAAGATAGAGGCGCAATCAGTATGTTAA 1713 0.3905 MGNNCVGSRKTSKDEFIFPSINLLPASWSWSHSVQQHPPPVCKIDNKDSQPVIMFKKHEHARPTNPKPMMMLPNIKRVPPKSAGLKAESVLLTNSGCFSEYYELGDELGKGQYGVTSLCFEKATGKRYACKCIPKVKLVKGDDLEDVRREIQIMHHLVGSSNVVSIKGAYEDSAVVYIVMELCEGGELFDRIVQRDHYTERKAAKLARTIVSIVESCHSLGVMHRDLKPENFLFVDGDEDSTLKAIDFGMSVFFKPGEKFSDVVGSAYYIAPEILRECYGPEADVWSAGVIIYLLLCGTAPFYGEIDEEIFHEVLHGKLDFSSDPWPSISESAKDLVKKMLVRDPSKRITAHEVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAENLSEEEISGLKELFKMIDTDNTGQITFEKLKAGLKMFGANLNEFEIFDLLNAADVDNSGTIDYGEFIAATLHFNKVGREDNLVTAFSYFDKDGSGYITQDELQKVCKEFGMEDVHLEEMIQEADQNNDGQIDYNEFVAMMLRGNVDLGNTGSKCRSTSFNIGLRKIEAQSVC 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05576 570 CDD EFh 483 538 IPR002048 GO:0005509
Vivi6g05576 570 ProSiteProfiles EF-hand calcium-binding domain profile. 513 544 IPR002048 GO:0005509
Vivi6g05576 570 Gene3D Transferase(Phosphotransferase) domain 1 188 365 - -
Vivi6g05576 570 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
Vivi6g05576 570 ProSitePatterns EF-hand calcium-binding domain. 488 500 IPR018247 -
Vivi6g05576 570 ProSitePatterns EF-hand calcium-binding domain. 522 534 IPR018247 -
Vivi6g05576 570 FunFam Calcium-dependent protein kinase 1 104 187 - -
Vivi6g05576 570 Pfam EF-hand domain pair 479 538 IPR002048 GO:0005509
Vivi6g05576 570 SUPERFAMILY EF-hand 399 539 IPR011992 -
Vivi6g05576 570 FunFam Calcium-dependent protein kinase 1 368 542 - -
Vivi6g05576 570 CDD STKc_CAMK 102 359 - -
Vivi6g05576 570 SMART efh_1 479 507 IPR002048 GO:0005509
Vivi6g05576 570 SMART efh_1 443 471 IPR002048 GO:0005509
Vivi6g05576 570 SMART efh_1 513 541 IPR002048 GO:0005509
Vivi6g05576 570 SMART efh_1 407 435 IPR002048 GO:0005509
Vivi6g05576 570 ProSiteProfiles Protein kinase domain profile. 102 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05576 570 Pfam EF-hand domain pair 420 468 IPR002048 GO:0005509
Vivi6g05576 570 FunFam Calcium-dependent protein kinase SK5 188 372 - -
Vivi6g05576 570 SUPERFAMILY Protein kinase-like (PK-like) 100 361 IPR011009 -
Vivi6g05576 570 Gene3D Phosphorylase Kinase; domain 1 104 187 - -
Vivi6g05576 570 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Vivi6g05576 570 ProSiteProfiles EF-hand calcium-binding domain profile. 475 510 IPR002048 GO:0005509
Vivi6g05576 570 PANTHER SERINE/THREONINE-PROTEIN KINASE 92 534 - -
Vivi6g05576 570 Gene3D - 367 541 - -
Vivi6g05576 570 Pfam Protein kinase domain 102 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05576 570 CDD EFh 408 467 IPR002048 GO:0005509
Vivi6g05576 570 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Vivi6g05576 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vivi6g05576 570 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Vivi6g05576 570 SMART serkin_6 102 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05576 Vivi-Chr6 161553482 161556788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05576 56 562 EF-hand Containing Proteins AT3G10660 68.442 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vivi6g05576 Pkinase 3.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05576 K13412 - gmx:100814475 800.431