Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05573 ATGGAAAATAAGGCTGAAAATCACATGACATCAGCTGCAGCCTTTGTTGAAGGAGGCATCCAAGAATCTTCGGATGATGCTTGCAGTATATGTCTTGAAGAGTTCAACGATAATGATCCTTCAACTATCACTTTTTGCCGGCACGAGTTTCACCTACAGTGCGTTCTTGAATGGTGTCAAAGAAGCTCTCAGTGTCCTATGTGTTGGCAACCTATTAGCTTGAAAGATCCTACCGGACAAGAATTGTTTGAGGGAGTAGAGCAAGAGAGGAAATGGAGGGAAACTCCATCAAGAAATGTTGACACCTTTCATCACCCTTCTATTGGAAATTCTGGATTTCAAAGTCTTCGCATGGAAGAGAGAATACTTCAAAATTTAGCAATTGTTGCATCAATCGAAAGAAGACACCGTCTTGCTCAAATGGAAGGGAGGGAAATTCAACAACTTGATCATGATCATGATCATGATCATGATCAGTTCTTACTATTCTCAAATCAACAAGTTGCACCTTCATCAATTTTTGGTTTAGGTGTTGAACGAGGAGACAATCCAAATGCCATTCATATGAGTAGTCAATCTAATCAAATAACATCTAATGAAGATGAACCACTACAACAAACACAACAATATCAAAATGAAAGCTCTAAAACTTCTAGATCTGATACAACTGGCTTAGAAATTCAATCATTTTCAGATACTTTGCGGTCTAAATTTAATGCATTATCGATGAGGTATAAAGAATCAATTTCAAAGGGTACAAAGGATTGGAAAGAAAGGTTATTCTCTCGAAGTTCTTGCATGTCAGAACACGGTTTAGATGCAAGAAAAAAGATTAACCCTGGAATTGCTAGTGTATCACAATCTATGAATAATAGAGTTGTAGATACTTCTTTTTCAAATCATTTGCAGGATAGTTCTATGGTAAATTCAAGAAAAATTAACCGTGCTGAAACTAAAGGAGAAGACTCTTCATGCAATAATAATAGAACAAGTGCTTCTTCTACTATTTCACATTCAAATTGA 1023 0.3636 MENKAENHMTSAAAFVEGGIQESSDDACSICLEEFNDNDPSTITFCRHEFHLQCVLEWCQRSSQCPMCWQPISLKDPTGQELFEGVEQERKWRETPSRNVDTFHHPSIGNSGFQSLRMEERILQNLAIVASIERRHRLAQMEGREIQQLDHDHDHDHDQFLLFSNQQVAPSSIFGLGVERGDNPNAIHMSSQSNQITSNEDEPLQQTQQYQNESSKTSRSDTTGLEIQSFSDTLRSKFNALSMRYKESISKGTKDWKERLFSRSSCMSEHGLDARKKINPGIASVSQSMNNRVVDTSFSNHLQDSSMVNSRKINRAETKGEDSSCNNNRTSASSTISHSN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05573 340 SUPERFAMILY RING/U-box 21 75 - -
Vivi6g05573 340 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 13 77 - -
Vivi6g05573 340 MobiDBLite consensus disorder prediction 176 224 - -
Vivi6g05573 340 SMART ring_2 28 68 IPR001841 -
Vivi6g05573 340 MobiDBLite consensus disorder prediction 185 224 - -
Vivi6g05573 340 MobiDBLite consensus disorder prediction 320 340 - -
Vivi6g05573 340 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 6 78 - -
Vivi6g05573 340 Pfam Ring finger domain 27 68 IPR001841 -
Vivi6g05573 340 MobiDBLite consensus disorder prediction 298 313 - -
Vivi6g05573 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 77 IPR013083 -
Vivi6g05573 340 MobiDBLite consensus disorder prediction 298 340 - -
Vivi6g05573 340 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05573 Vivi-Chr6 161479965 161482100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05573 11 68 C3H Transcription Factor Family AT5G41350 46.552 1.97e-11 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05573 6 161479965 161482100 Vivi6g05573 6 161479965 161482100 ECH