Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05572 ATGAGACCTACAGATTTTCTTAGGGTTTTGAACAAACAGTTTCTCGGAATCGCCGGTGACACCGCAAATGTCATTGCTCAGAAGCTGACATCACCGTCTCCTCTGTCGCGTAAACCGGCGTTTATAGATGCATTTATGTACAAGATGAAAAAGAATCCAGAACTTCTGAAGAACAAAACCATTTGGTCAAGGAGATCCACTATATTGCCGGAGTTTGTTGATTCTCAGGTGAATATTTACAATGGGAAAACCACTATTCGTTGTAAGATTAGTGAGGGAAGAGTTGGTCATAAGTTTGGTGAGTTTGCTTTAACCAGGAAACGAAAATCTAGAGATCAAGCTAATGCCAAAGTTAAACTACTCAAGAAAAAGAAGTGA 378 0.3968 MRPTDFLRVLNKQFLGIAGDTANVIAQKLTSPSPLSRKPAFIDAFMYKMKKNPELLKNKTIWSRRSTILPEFVDSQVNIYNGKTTIRCKISEGRVGHKFGEFALTRKRKSRDQANAKVKLLKKKK 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05572 125 Hamap 30S ribosomal protein S19 [rpsS]. 6 119 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi6g05572 125 FunFam Ribosomal protein S19, mitochondrial 32 120 - -
Vivi6g05572 125 Coils Coil 104 124 - -
Vivi6g05572 125 ProSitePatterns Ribosomal protein S19 signature. 81 105 IPR020934 GO:0003723
Vivi6g05572 125 Gene3D 30s Ribosomal Protein S19; Chain A 34 120 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vivi6g05572 125 Pfam Ribosomal protein S19 47 109 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi6g05572 125 SUPERFAMILY Ribosomal protein S19 36 110 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vivi6g05572 125 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 35 112 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi6g05572 125 PRINTS Ribosomal protein S19 family signature 61 80 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi6g05572 125 PRINTS Ribosomal protein S19 family signature 81 93 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi6g05572 125 PRINTS Ribosomal protein S19 family signature 93 108 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05572 Vivi-Chr6 161472132 161473725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05572 35 107 Cytoplasmic Ribosomal Protein Gene Family AT1G04270 30.667 2.00e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05572 K02965 - gmx:100782150 188.348