Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05566 ATGGAGGATGAGAATTATGCAAGTGGATTATGGAGAACGAAATCGGAGCAATTAGAATCAGTGGCTGAAGATTTGCAGTCGACTCCGGGGTCGACCGAGTCGATCAGAGTGGCGGATGGTGGTAGCGGGAGTCTTACAAGGAAGTCGAGGAGGGCGTCGCCGGGCGGAAGAAACACACACATAAGGAAAGCGAGGAGTGCTCAAACAAATTTGAAAGTTGAGTTGGATGAAGTTAATAATGGTGCTGCTCTTAGCAGAGCTTCGAGTTTGGGACTATCGTTCTCTTTCACTGGATTTTCTGTTCCTCTTGATGAAGTCAGTAGCTCCAAACCATTCAGTGATGATGAAGATATTCCTGAAGATATTGAAGCTGGAATCCATAAGCCAAAGTTTCAAACTGAACCAACTCTACCAATATATCTAAAGTTCACGGATGTGACATACAAGGTAGTGCTCAAAGGCATGACAAAAAGTGTTGACAAAGAAATCTTGAAAGGGATTACTGGTTGTGTAAATCCAGGAGAAGTTTTAGCGTTGATGGGTCCCTCAGGAAGTGGAAAAACATCTTTGTTAAATCTAATTGGAGCTAGGTTACATCAACCAACTATTGGTGGATCTATTACTTACAATGATCAACCATATTCCAAGTTCCTGAAAAGCAGGATTGGATTTGTGACACAAGATGATGTTTTGTTTCCTCACTTAACTGTCAAAGAAACATTGACATATGCCGCTCGTTTAAGGTTGCCGAAAACATTAACTAGAGAGCAGAAGGAAAAAAGAGCTTTAGATGTTATCTATGAGCTAGGCTTGGAGAGGTGCCAAGACACTATGATAGGAGGTTCCTTTGTTCGAGGAGTATCTGGTGGAGAGAGGAAGAGAGTTTGTATTGGCAATGAGATAATAATCAATCCTTCACTTTTGTTTCTTGATGAGCCAACATCTGGTTTGGATTCTACAACTGCCTTGAGAATAGTTCAAATGCTACATGACATAGCTGAGGCTGGTAAGACGATAGTGACAACAATCCATCAACCATCAAGTAGACTATTTCACAAATTCGATAAGTTGATCCTTTTGGGAAAAGGGAACTTGCTTTACTTTGGAAAAGCATCGGAAGCAATGGACTACTTCAAATTCATAGGGTGTTCTCCTCTCATTACAATGAACCCAGCAGAGTTTCTATTAGATCTTGCAAATGGAAACATGGTTGATATTTCTGTACCATCAGAGTTAGAGGATAAAGTTCATATTGAAAACGCAGAAGCTGAAACATCAAACGGGAAGCCATCAGCCGCAGTTGTACAAGAGTATCTAGTGGAGGCATATGAGACTAAAGTAGCAGAAACTGAGAAGAAAAAGATATTAGTTCCAATTCCTCTTGATGAAGAAATGAAGTCTAAGGTTCGTTCGCGCAAAAGACAGTGGGGAGCAAGTTGGTTAGAACAATATTCAATATTGTTTTCTCGAGGATTCAAAGAACGGAGACATGACTATTTTAGCTGGTTGAGAATTACACAAGTTCTTTCCACTGCAGTAATTCTAGGATTACTTTGGTGGCAATCAGATGCTAGCAACCCAAAGGGTCTTCAAGATCAGGCAGGATTGCTTTTCTTTATAGCCGTGTTTTGGGGATTTTTTCCTGTGTTCACTGCAATATTCACATTTCCTCAAGAAAGAGCAATGCTGAATAAGGAAAGAGCAACTGATATGTACAGATTAAGTGCATACTTTGTGGCAAGAACTACAAGTGACCTTCCATTAGACCTTGTATTACCAGTGCTCTTCCTCCTAGTTGTTTACTTCATGGCTGGTTTGAGACTCAGTGCAGGACCCTTTTTCCTTAGTATTCTTACTGTTTTTCTCTGCATTGTAGCAGCTCAGGGACTTGGACTTGCTATTGGGGCAACACTGATGGACTTGAAAAGAGCAACGACTTTGGCTTCGGTTACTGTCATGACTTTTATGTTGGCTGGTGGATTTTTTGTAAAGAATGTCCCGATATTCATATCTTGGATTCGGTACTTATCTTTCAACTACCATACATACAAGCTTTTGCTGAAGGTGCAATATGAACACATTACACCTAGCATAAATGGGATCAGAATTGACAGTGGTATCAATGAGGTTATTGCTTTGATAGCTATGGTATTTGGTTACCGTTTATTGGCATATTTTTCTTTGCGATGGATGAAAGTTCAGCCATAG 2208 0.404 MEDENYASGLWRTKSEQLESVAEDLQSTPGSTESIRVADGGSGSLTRKSRRASPGGRNTHIRKARSAQTNLKVELDEVNNGAALSRASSLGLSFSFTGFSVPLDEVSSSKPFSDDEDIPEDIEAGIHKPKFQTEPTLPIYLKFTDVTYKVVLKGMTKSVDKEILKGITGCVNPGEVLALMGPSGSGKTSLLNLIGARLHQPTIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLHDIAEAGKTIVTTIHQPSSRLFHKFDKLILLGKGNLLYFGKASEAMDYFKFIGCSPLITMNPAEFLLDLANGNMVDISVPSELEDKVHIENAEAETSNGKPSAAVVQEYLVEAYETKVAETEKKKILVPIPLDEEMKSKVRSRKRQWGASWLEQYSILFSRGFKERRHDYFSWLRITQVLSTAVILGLLWWQSDASNPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERATDMYRLSAYFVARTTSDLPLDLVLPVLFLLVVYFMAGLRLSAGPFFLSILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKNVPIFISWIRYLSFNYHTYKLLLKVQYEHITPSINGIRIDSGINEVIALIAMVFGYRLLAYFSLRWMKVQP 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05566 735 FunFam ABC transporter G family member 22 151 381 - -
Vivi6g05566 735 Pfam ABC-2 type transporter 482 691 IPR013525 GO:0016020|GO:0140359
Vivi6g05566 735 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 141 387 IPR003439 GO:0005524
Vivi6g05566 735 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 104 724 - -
Vivi6g05566 735 MobiDBLite consensus disorder prediction 1 65 - -
Vivi6g05566 735 ProSitePatterns ABC transporters family signature. 287 301 IPR017871 GO:0005524|GO:0016887
Vivi6g05566 735 MobiDBLite consensus disorder prediction 10 39 - -
Vivi6g05566 735 Pfam ABC transporter 164 315 IPR003439 GO:0005524
Vivi6g05566 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 380 IPR027417 -
Vivi6g05566 735 CDD ABCG_EPDR 138 369 - -
Vivi6g05566 735 Gene3D - 140 381 IPR027417 -
Vivi6g05566 735 SMART AAA_5 173 364 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05566 Vivi-Chr6 161387537 161393647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05566 127 373 Calmodulin-binding Proteins AT2G36910 29.183 7.53e-15 77.0