Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05564 ATGTCCAGAACCTGGATGAGAGGAGCGAGGTTGCTATCATCGTTCTCGCGCTGCCGGAAATTGATCATTCATACGATCAACTATTCTCCCTCGTTTCGTTCTACAACCATTTTCACAAACCACCTGCATCCTTCTCACTCTCAACGCCGACTCTTCAACTCTTCAACTTCTTCACCATCATTAAAACCTTCTTCTAACAAGCTCTTCGTAGGAGGTCTATCATGGTCCGTAGATGAAAAATCCCTCAAAGACGCTTTCTCTTCCTTCGGAGAAGTCACCGAAGTGAGGATAGTGTATGATAAAGACAGTGGTAGGGCTAGAGGCTTTGGATTTGTTATCTTTTCAAACGAAGATGATGCAAAATCAGCAAAAGATGCAATGGACGGAAAGGCACTGTTAGGTAGACCCTTGAGGATAAATTTTGCTCTCGAAAAGGCTCGTGGTGTACCTGTTGTAGTTCCTCGGTTTTCAGATATTCGAAACTTAAACCGACGCTGA 498 0.4398 MSRTWMRGARLLSSFSRCRKLIIHTINYSPSFRSTTIFTNHLHPSHSQRRLFNSSTSSPSLKPSSNKLFVGGLSWSVDEKSLKDAFSSFGEVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKARGVPVVVPRFSDIRNLNRR 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05564 165 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 44 146 - -
Vivi6g05564 165 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
Vivi6g05564 165 SMART rrm1_1 67 140 IPR000504 GO:0003723
Vivi6g05564 165 Gene3D - 32 148 IPR012677 -
Vivi6g05564 165 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 138 IPR000504 GO:0003723
Vivi6g05564 165 CDD RRM2_NsCP33_like 67 142 - -
Vivi6g05564 165 SUPERFAMILY RNA-binding domain, RBD 48 148 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05564 Vivi-Chr6 161368550 161370081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05564 50 145 C2H2 Transcription Factor Family AT2G19380 35.417 3.12e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05564 - - psat:127125499 271.166