Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05562 ATGATGCTGAGTTTCCGATTGAGGAACTTGTTATCCCATGTCAAAACAAGAAGAACAAAGAAAACCAACCGAAAAAACCGAAACAAAAACCCTCACAAACCCAGAAACCAAACCTGCATTTCTTCCATTACCAATAATTCCCCATCTCTCATAGAAGAAGAAGAAGAAGACGCAGAAGAAGGTTTCAGCATCAAAAGCTCTGCCCCATCACACACCCACGGCGTTCAGCCCTTAGGCAATCTCTATTTCAATCCCGGTTCCATCAACTCCAGAGACACTGGCTTAGGTAATCTTCATACCCTCACTGATGAACTTGTTCTTGACATTCTAGCGTTTTTGGATGGTACCAGCTTAGGTGTTTTGGCTTCTGTTAGCAAATCGTTTTATGTTTTCTCTAATCATGAACCCCTTTGGAGGAATCTTGTTTTGGAGAATTTTACGGATGGGTTTCAGTATAATGGGTCATGGAAAGCTACTTTTGTTTCTTCTTGTTACCCTTTGTTTGATGTTTCATGTAGTAGTGATCTTAGGAGTTTCAAAGTTAGAGACTTTTATTCTGATTATCTTTTCCAGAGTTGGTTGTGTGCTAATCTTGAAATGAAACCGGAATGGTTGGAGAGGGATAATATTGTGAGAAAAAAGGGTATTTCGGTTGAGGAATTTGTGATGAGTTTCGAGGAGGTTAATAAGCCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGACGCGTTGAGGAAATGGGATAGAGATTATTTGGTTAAGTTATGCGGTGATGATGTTAAGTTTGCGGTTGGGCCGGTGGAGATGAAACTCGGAGAGTATTTTGGATATTCGGATCAAGTTAGAGAAGAACGGCCGCTGTATCTGTTTGATCCAAAATTTGCTGAAAAAGTTCCGACGTTGGGTTCTGAATATGAAGTTCCGATTTATTTTCGGGAGGATTTGTTTGGTGTTTTGGGCAATGAGAGGCCTGACTACAGGTGGATTATTATTGGACCGGCTGGGTCTGGATCGTCTTTTCATGTTGATCCAAATTCAACCTCAGCTTGGAATGCAGTGATCAAGGGGTCGAAGAAATGGATACTGTTTCCTCCTGATGTAATTCCGCCTGGTGTTCATCCTAGTCCTGATGGTGCGGAGGTGGCGTCTCCTGTTTCAATAATGGAATGGTTCATGAACTTTTACGGCGCAACAAAGAATTGGAAAAAGAGACCGATTGAGTGCATATGTAAAGCCGGGGAAGTCATCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAATCTGGAGGAATCAATTGCCATAACACAAAACTATGTTAGCAGGAGAAATTTGTTAAATGTGTTGGATTTTCTTAAAAGGCCGAATGCGAGCATACTGGTGTCTGGAACAATGGATAGAGTGAATCTGCATGATAAGTTTAAGAGTGCTATTGAGGCTTCTTTTCCGGGAGAAATTGATGAACTGACCCGAAAAGAAGAAGAGAAAAAGATCCAGCAAAGGAAACTTTCCATCTGGGATTCTATTGCAGACTCCAGCGTGGGAGCTTTCAAGTTCTCTTTCTAG 1566 0.4163 MMLSFRLRNLLSHVKTRRTKKTNRKNRNKNPHKPRNQTCISSITNNSPSLIEEEEEDAEEGFSIKSSAPSHTHGVQPLGNLYFNPGSINSRDTGLGNLHTLTDELVLDILAFLDGTSLGVLASVSKSFYVFSNHEPLWRNLVLENFTDGFQYNGSWKATFVSSCYPLFDVSCSSDLRSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKKGISVEEFVMSFEEVNKPVLLEGCIDNWDALRKWDRDYLVKLCGDDVKFAVGPVEMKLGEYFGYSDQVREERPLYLFDPKFAEKVPTLGSEYEVPIYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIMEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASILVSGTMDRVNLHDKFKSAIEASFPGEIDELTRKEEEKKIQQRKLSIWDSIADSSVGAFKFSF 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05562 521 MobiDBLite consensus disorder prediction 33 49 - -
Vivi6g05562 521 SMART fbox_2 101 141 IPR001810 GO:0005515
Vivi6g05562 521 Gene3D Cupin 190 441 - -
Vivi6g05562 521 ProSiteProfiles JmjC domain profile. 296 456 IPR003347 -
Vivi6g05562 521 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 95 518 - -
Vivi6g05562 521 MobiDBLite consensus disorder prediction 12 32 - -
Vivi6g05562 521 FunFam F-box protein At1g78280 190 441 - -
Vivi6g05562 521 SUPERFAMILY F-box domain 93 162 IPR036047 GO:0005515
Vivi6g05562 521 Gene3D - 91 165 - -
Vivi6g05562 521 ProSiteProfiles F-box domain profile. 95 141 IPR001810 GO:0005515
Vivi6g05562 521 SUPERFAMILY Clavaminate synthase-like 212 453 - -
Vivi6g05562 521 SMART cupin_9 287 456 IPR003347 -
Vivi6g05562 521 MobiDBLite consensus disorder prediction 12 71 - -
Vivi6g05562 521 Pfam Cupin-like domain 220 439 IPR041667 -
Vivi6g05562 521 Pfam F-box domain 101 139 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05562 Vivi-Chr6 161361995 161364049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05562 86 445 Glycosyltransferase AT1G78280 37.736 9.32e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi6g05562 Cupin_8 6e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05562 - - lja:Lj1g3v4753250.1 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05562 6 161361995 161364049 Vivi6g05562 6 161361995 161364049 ECH