Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05559 ATGGTGAAGGGACGTCAAGGCGAGCGTGTTAGGCTCTATGTGAGGGGTACCATCCTTGGATACAAAAGATCCAAATCGAACCAGTACCCAAACACATCTCTCGTCCAAATTGAAGGAGTGAACACCAAGGAGGAGGTTGCATGGTATGCCGGCAAGCGATTGGCATATATCTACAAGGCCAAGGTGAAGAAGAATGGAACCCATTACCGCTGCCTATGGGGAAAGGTTACAAGGCCACACGGTAATAGTGGTATTGTTCGTGCCAAATTCACATCAAATCTTCCTCCCAAATCAATGGGATCAAGGATAAGAGTATTTATGTATCCCAGTAACATTTGA 339 0.4572 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTKEEVAWYAGKRLAYIYKAKVKKNGTHYRCLWGKVTRPHGNSGIVRAKFTSNLPPKSMGSRIRVFMYPSNI 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05559 112 FunFam 60S ribosomal protein L35a 7 112 - -
Vivi6g05559 112 Pfam Ribosomal protein L35Ae 12 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vivi6g05559 112 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 14 106 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vivi6g05559 112 PANTHER 60S RIBOSOMAL PROTEIN L35A 2 112 IPR001780 GO:0003735|GO:0005840|GO:0006412
Vivi6g05559 112 Gene3D translation elongation factor selb, chain A, domain 4 6 112 IPR038661 -
Vivi6g05559 112 ProSitePatterns Ribosomal protein L35Ae signature. 74 95 IPR018266 GO:0003735|GO:0005840|GO:0006412
Vivi6g05559 112 SUPERFAMILY Translation proteins 12 106 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05559 Vivi-Chr6 161332674 161334484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05559 1 112 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 91.964 6.01e-76 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05559 K02917 - jre:108991889 226.868