Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05541 ATGGAGCAAGAAGAGATATTTGAGAAATTCACATGGAAGGTGGAGAATTTCTCTCGTTTATGCGAGAAGTTTGAGTATTTTGTCCTAGGAGGCTATCCATGGGGTCCATTTCACGAAGGATTAGGAATATTTTTGGAGGCCGTGGTAACTGGTAATATGTCTGAGGGATGGAACAGAGATGTTAAATTTAAGTTACTTCTATTTAATCAAGTGAATGCCAAAATCACAGTCACAAAAGAATTTCATCACGAATTTAATGAAAAGGAGAAAGTTAAAGGTGCATTTCATTTTATGACGACACGAGAGGTTCGTAATCCAAAAAAAGGATTTGTTGTGAATAATGAGTGTATTGTTGTCGCTGAAATTTTGGTTTGTAAGTCAACACATGAGAAAAGAGTATATCAAACGGTTAATATAACTTCATCCCTCCTATTGGGAAGTCAAATTGGTCATCCGGAAGTGGAATCTCCTGTTGTTTCTATGGAAGATACTAAAAATAATGACGTGGAGTTTGTGTTTTCTGGATTGAGAAGAGTTCTTTATTTCCTTCAAACTAGAAAAGTAAAAGACATGAACGAACATGCATGTAAGGAACTTCGAGTTTTATGGGATGAACTTAAGAAATTTAAGTTTGATGTTACTTGGTTAATGCCTCATGTTCACTATGCGTTGGGAATGCAACGTTTTGCGGAGAAAGCTATGGAAGTGGAGAAATTGAATGATACTTTGTTGGTTTTAGAGCTCGAAACAATGAGGATAAAGGAAAAGTTGGTTAGTGCTGAGATGAGTTTAGATGTTGAGAGGCAGTTGTTGAAAGCAAAAGATGTCGAAGAAATAGGTTTGAGTTATGATTTGGGTTGTGAGAAATTGGTTCCTCTTTATGGTAAAGGAAAATCTCTAACTGATACAAGGATTAAATCATATCTTGGAATGGAGATTCCTCCTCGTCCTTCCGGACAGAGGCCACAAACTGTTGAGGAAGATGAAGAGGAACTTGAGGGAGGGGAAGAAGAGGAAGAGGAACTTGAAGAAGGTGAAGATGAAAATGAAGAGGAAGAGTTACTACATCATATTTAA 1077 0.3695 MEQEEIFEKFTWKVENFSRLCEKFEYFVLGGYPWGPFHEGLGIFLEAVVTGNMSEGWNRDVKFKLLLFNQVNAKITVTKEFHHEFNEKEKVKGAFHFMTTREVRNPKKGFVVNNECIVVAEILVCKSTHEKRVYQTVNITSSLLLGSQIGHPEVESPVVSMEDTKNNDVEFVFSGLRRVLYFLQTRKVKDMNEHACKELRVLWDELKKFKFDVTWLMPHVHYALGMQRFAEKAMEVEKLNDTLLVLELETMRIKEKLVSAEMSLDVERQLLKAKDVEEIGLSYDLGCEKLVPLYGKGKSLTDTRIKSYLGMEIPPRPSGQRPQTVEEDEEELEGGEEEEEELEEGEDENEEEELLHHI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05541 358 SUPERFAMILY TRAF domain-like 9 129 - -
Vivi6g05541 358 ProSiteProfiles MATH/TRAF domain profile. 7 122 IPR002083 GO:0005515
Vivi6g05541 358 CDD MATH 9 122 IPR002083 GO:0005515
Vivi6g05541 358 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 7 137 IPR008974 GO:0005515
Vivi6g05541 358 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 5 276 - -
Vivi6g05541 358 MobiDBLite consensus disorder prediction 326 351 - -
Vivi6g05541 358 Coils Coil 325 355 - -
Vivi6g05541 358 MobiDBLite consensus disorder prediction 310 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05541 Vivi-Chr6 161113671 161120228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05541 288 331 C3H Transcription Factor Family AT1G19310 54.545 2.62e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05541 - - vvo:131615182 650.588