Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05525 ATGGCCGCCACCAACTCAGCCCCACCACGACAGCTCTCTCAGAAAGAAGCCGACATCCAGATGATGTTAGCCGCCGATGTCCATCTCGGTACAAAGAATTGTGATTTCCAAATGGAGCGATACATATTCAAGCGCCGAAATGACGGTATTTACATTATTAATCTTGGAAAAACATGGGAGAAGCTGCAACTTGCGGCTAGGGTTATTGTAGCTATTGAAAACCCTCAGGACATCATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATTGCTGGTAGACATACTCCTGGTACATTCACCAATCAGCTTCAAACTTCATTCAGTGAGCCCCGTCTTCTCATCCTCACTGACCCAAGAACCGATCACCAGCCAATTAAGGAAGCTGCACTTGGAAATATTCCCACAATTGCCTTCTGTGATACTGATTCTCCAATGAGATATGTTGATATTGGAATTCCTGCCAACAACAAGGGAAAGCATAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTGTTGCAGATGCGTGGTACTATTCGCCCTGGCCTTAAGTGGGATGTCATGGTGGATCTATTCTTCTATAGAGAACCAGAGGAGGCCAAGGAGCAAGAGGAAGATGAAGTTCTTGCTCCAGATTATGCCATTGCCGATTTCAATGCAGCTTCTATCCCCAATGATGGACAATGGCCTGCTGCCATTGATCAATCATCATGGAGTGATGCAGTTCCACAGCCCATTCCCGCAGTTCCTGCTGTAAACTGGACAGCCCCAGAAGCTGTTGCAGGGGACTGGGGTGAAGCTGTTCCTCCACCACAACAAACAGGTGCTCCCGTAGTTGAATCTATCCAGGCGACTGGTTGGGAATAA 909 0.4697 MAATNSAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDEVLAPDYAIADFNAASIPNDGQWPAAIDQSSWSDAVPQPIPAVPAVNWTAPEAVAGDWGEAVPPPQQTGAPVVESIQATGWE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05525 302 ProSitePatterns Ribosomal protein S2 signature 2. 123 147 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vivi6g05525 302 NCBIfam 30S ribosomal protein S2 14 210 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vivi6g05525 302 FunFam 40S ribosomal protein SA 18 224 - -
Vivi6g05525 302 MobiDBLite consensus disorder prediction 276 302 - -
Vivi6g05525 302 CDD RPS2 22 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi6g05525 302 PRINTS Ribosomal protein S2 signature 19 37 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi6g05525 302 PRINTS Ribosomal protein S2 signature 140 151 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi6g05525 302 PRINTS Ribosomal protein S2 signature 49 58 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi6g05525 302 PRINTS Ribosomal protein S2 signature 123 140 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi6g05525 302 PRINTS Ribosomal protein S2 signature 98 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi6g05525 302 PRINTS Ribosomal protein S2 signature 161 175 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi6g05525 302 Pfam Ribosomal protein S2 121 186 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi6g05525 302 Pfam Ribosomal protein S2 22 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vivi6g05525 302 Gene3D - 18 222 - -
Vivi6g05525 302 Hamap 40S ribosomal protein SA [rps-0]. 6 255 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vivi6g05525 302 PANTHER 40S RIBOSOMAL PROTEIN SA 8 301 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vivi6g05525 302 SUPERFAMILY Ribosomal protein S2 14 204 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05525 Vivi-Chr6 160900507 160902635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05525 1 302 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.222 4.40e-152 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05525 K02998 - gmx:548014 527.709