Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05504 ATGGCGGAAACGAAGGAAGAGAGTAAATCTAGCGAAGAGAGTGTGAAGCTTTTCGTAGGTCAAGTACCGAAGCACATGACGGAAGATGAGTTACTTACAATGTTCAAAGAGTTTGCGTTGGTTGAAGAAGTCAACATCATCAAAGACAAAGCCACTCGCGCTTCTCGAGGTTGTTGCTTTGTGATTTGTCCTTCTAGAGATGAGGCTGATAAGGCAGTTAATGCGTGTCACAATAAGAAGACGTTGCCTGGGGCATCTAGTCCTTTGCAAGTGAAGTATGCGGATGGCGAGTTGGAAAGATTAGAACACAAACTTTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAGTATCTGAACTTTTTTCCAAGTACGGAACTATAAAGGATTTACAGCTTTTAAGAGGTTCTCAACAGACAAGTAAAGGTTGTGCATTTTTGAAATATGAAACTAAAGAGCAAGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCACAAAATGGAGGGTTCAAGTGTTCCTTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGAAGAGCTCAGAAAGCACAATCTCAAGCTTCTAATGTGGCACATGCTGACTCTCAGCATCCTTCGTTGTTTGGAGCGATGCCTATGGGCTATGTTCCCCCATATAACGGTTATGGTTATCAGGCTCCAGCAAATTATGGGCTCATGCCGTACCGCATGCCACCAATGCAGAATCAAGCTGGTTACCCCAATATGATGCCTCACATGAATCAAGGAAACGCTCTGCGGCCCGATCTTGGCCCCAATATGAATCCTAGAAACTATCATGTGCCTCCTGCAAGTTATGTTGGTTCTTATCCTGCTGTGCCAGGTATACAACATCCAATGCCCTATCCAGCAGGAATGATTAGTCCAAGGCCTATGAATAGTCCTCCCGGTTCTGTTTCTCCTTCCGGTGGAAACGGTAACTCCGCTACATCTTCAGGATCCAGCAAAAATTCAGGTGGTGGTCAGATTGAAGGACCACCTGGCGCAAATCTATTTATCTACCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTAATGCGTTTCAACCTTTTGGTAGAGTTTTAAGTGCTAAAGTTTTTGTTGACAAAGCAACCGGTGTCAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGATCATGCTCAATCTGCAATTAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACCCGGTAAACCTTATTGA 1299 0.4326 MAETKEESKSSEESVKLFVGQVPKHMTEDELLTMFKEFALVEEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSELFSKYGTIKDLQLLRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVAHADSQHPSLFGAMPMGYVPPYNGYGYQAPANYGLMPYRMPPMQNQAGYPNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPAVPGIQHPMPYPAGMISPRPMNSPPGSVSPSGGNGNSATSSGSSKNSGGGQIEGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPDHAQSAISMMNGCQLGGKKLKVQHKRDNKPGKPY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05504 432 CDD RRM1_2_CELF1-6_like 104 179 - -
Vivi6g05504 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Vivi6g05504 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 419 IPR000504 GO:0003723
Vivi6g05504 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Vivi6g05504 432 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Vivi6g05504 432 Gene3D - 2 98 IPR012677 -
Vivi6g05504 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Vivi6g05504 432 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Vivi6g05504 432 Gene3D - 99 192 IPR012677 -
Vivi6g05504 432 MobiDBLite consensus disorder prediction 193 207 - -
Vivi6g05504 432 MobiDBLite consensus disorder prediction 189 208 - -
Vivi6g05504 432 MobiDBLite consensus disorder prediction 302 344 - -
Vivi6g05504 432 CDD RRM1_2_CELF1-6_like 16 92 - -
Vivi6g05504 432 CDD RRM3_CELF1-6 349 421 - -
Vivi6g05504 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Vivi6g05504 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Vivi6g05504 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Vivi6g05504 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Vivi6g05504 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Vivi6g05504 432 PANTHER RNA BINDING PROTEIN 14 425 - -
Vivi6g05504 432 FunFam RNA-binding protein BRN1 313 424 - -
Vivi6g05504 432 Gene3D - 318 424 IPR012677 -
Vivi6g05504 432 SUPERFAMILY RNA-binding domain, RBD 103 427 IPR035979 GO:0003676
Vivi6g05504 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 425 IPR000504 GO:0003723
Vivi6g05504 432 FunFam RNA-binding protein BRN1 2 99 - -
Vivi6g05504 432 SMART rrm1_1 348 421 IPR000504 GO:0003723
Vivi6g05504 432 SMART rrm1_1 16 92 IPR000504 GO:0003723
Vivi6g05504 432 SMART rrm1_1 104 179 IPR000504 GO:0003723
Vivi6g05504 432 MobiDBLite consensus disorder prediction 315 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05504 Vivi-Chr6 160659073 160665269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05504 347 420 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 2.10e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05504 K13207 - gmx:100813239 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05504 6 160659073 160665269 Vivi6g05504 6 160659073 160665269 ECH