Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05503 ATGGCGGAAACGAAGGAAGAGAGTAAATCTAGCGAAGAGAGTGTGAAGCTTTTCGTAGGTCAAGTACCGAAGCACATGACGGAAGATGAGTTACTTACAATGTTCAAAGAGTTTGCGTTGGTTGAAGAAGTCAACATCATCAAAGACAAAGCCACTCGCGCTTCTCGAGGTTGTTGCTTTGTGATTTGTCCTTCTAGAGATGAGGCTGATAAGGCAGTTAATGCGTGTCACAATAAGAAGACGTTGCCTGGGGCATCTAGTCCTTTGCAAGTGAAGTATGCGGATGGCGAGTTGGAAAGATTAGAACACAAACTTTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAGTATCTGAACTTTTTTCCAAGTACGGAACTATAAAGGATTTACAGCTTTTAAGAGGTTCTCAACAGACAAGTAAAGTAGGTTGTGCATTTTTGAAATATGAAACTAAAGAGCAAGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCACAAAATGGAGGGTTCAAGTGTTCCTTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGAAGAGCTCAGAAAGCACAATCTCAAGCTTCTAATGTGGCACATGCTGACTCTCAGCATCCTTCGTTGTTTGGAGCGATGCCTATGGGCTATGTTCCCCCATATAACGGTTATGGTTATCAGGCTCCAGCAAATTATGGGCTCATGCCGTACCGCATGCCACCAATGCAGAATCAAGCTGGTTACCCCAATATGATGCCTCACATGAATCAAGGAAACGCTCTGCGGCCCGATCTTGGCCCCAATATGAATCCTAGAAACTATCATGTGCCTCCTGCAAGTTATGTTGGTTCTTATCCTGCTGTGCCAGGTATACAACATCCAATGCCCTATCCAGCAGGAATGATTAGTCCAAGGCCTATGAATAGTCCTCCCGGTTCTGTTTCTCCTTCCGGTGGAAACGGTAACTCCGCTACATCTTCAGGATCCAGCAAAAATTCAGGTGGTGGTCAGATTGAAGGACCACCTGGCGCAAATCTATTTATCTACCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTAATGCGTTTCAACCTTTTGGTAGAGTTTTAAGTGCTAAAGTTTTTGTTGACAAAGCAACCGGTGTCAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGATCATGCTCAATCTGCAATTAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACCCGGTAAACCTTATTGA 1302 0.4324 MAETKEESKSSEESVKLFVGQVPKHMTEDELLTMFKEFALVEEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSELFSKYGTIKDLQLLRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVAHADSQHPSLFGAMPMGYVPPYNGYGYQAPANYGLMPYRMPPMQNQAGYPNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPAVPGIQHPMPYPAGMISPRPMNSPPGSVSPSGGNGNSATSSGSSKNSGGGQIEGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPDHAQSAISMMNGCQLGGKKLKVQHKRDNKPGKPY 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05503 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 426 IPR000504 GO:0003723
Vivi6g05503 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 184 IPR000504 GO:0003723
Vivi6g05503 433 FunFam RNA-binding protein BRN1 isoform X1 100 193 - -
Vivi6g05503 433 MobiDBLite consensus disorder prediction 194 208 - -
Vivi6g05503 433 MobiDBLite consensus disorder prediction 316 340 - -
Vivi6g05503 433 SUPERFAMILY RNA-binding domain, RBD 103 428 IPR035979 GO:0003676
Vivi6g05503 433 Gene3D - 319 425 IPR012677 -
Vivi6g05503 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Vivi6g05503 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Vivi6g05503 433 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 420 IPR000504 GO:0003723
Vivi6g05503 433 CDD RRM3_CELF1-6 350 422 - -
Vivi6g05503 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Vivi6g05503 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Vivi6g05503 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Vivi6g05503 433 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Vivi6g05503 433 SMART rrm1_1 349 422 IPR000504 GO:0003723
Vivi6g05503 433 SMART rrm1_1 104 180 IPR000504 GO:0003723
Vivi6g05503 433 SMART rrm1_1 16 92 IPR000504 GO:0003723
Vivi6g05503 433 CDD RRM1_2_CELF1-6_like 16 92 - -
Vivi6g05503 433 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Vivi6g05503 433 MobiDBLite consensus disorder prediction 303 345 - -
Vivi6g05503 433 PANTHER RNA BINDING PROTEIN 14 426 - -
Vivi6g05503 433 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Vivi6g05503 433 MobiDBLite consensus disorder prediction 189 209 - -
Vivi6g05503 433 Gene3D - 2 99 IPR012677 -
Vivi6g05503 433 Gene3D - 100 194 IPR012677 -
Vivi6g05503 433 FunFam RNA-binding protein BRN1 314 425 - -
Vivi6g05503 433 FunFam RNA-binding protein BRN1 2 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05503 Vivi-Chr6 160659072 160665269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05503 348 421 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 2.12e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05503 K13207 - gmx:100813239 751.895