Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05484 ATGGCTGATTCTCCCACAAACCGCAACCCTTCACACAAACCAAAACGACCCTGTGATTATTGCAGCAATTCAACCGCAGTTCTCTACTGCAGAGCCGATTCCGCCAAGCTCTGTTTCTCTTGCGACCGTGAAGTCCACTCAACAAACCAGCTTTTCTCAAAGCACACACGCTCCTTAATCTGTGACTCCTGCGATGATTCACCTGCTACAATTCTCTGTTCAACGGAATCCTCTGTTTTCTGTCAGAATTGTGATTGGGAAAATCATAATCTGTCTCTTTCTTCTCCGCATGAAAGAAGGCCTCTTGAGGGTTTCACTGGGTGTCCTTCGGTGAGTGAGCTGTTGGCGATTGTTGGGTTGCAGGATATTGGGAAAAAATCGTTGGTTTTGGATCAGGATAGTTTTGGAGATGGGTTTTTAGGGTATGAGATGGAAGGGGTTTCGGATTTGTTTGTTTGGGATGCTCCGAGTTTTGTTAGTCTTGATGATCTTATTTCTTCTTCTCCTTCTTCGCATAATTATAGTGCTATGGAGGTTCCTCCTTTGCCAAAGAATCGTAAGGCTGCTTGTGGGAGACAGAAAGAAGAGATTTTAAGTCAGCTTCGTGAGATGACGAAGTCTGAGCCCTTGGATTATGAAGAGTATATGCCATCAAGGAGTTTATCTACAGATTTTGAACACGACACTAAGACTGACATCGCTCCTAGAAATGAGTGGCTCAAAGAAAGCAGCGAACCTACGTATCAAGTTGTACCTGTTGATACGTCAATCAAAGCTCAAACCGAAGAAATTCCAGTTAAACATTCTGCATCTTCTGTCGGGGAGCCGCTTACCCACATGACACCTTCAGAATCTTTTAAGTCTGAAACGTCAACTACTCTTAAAGCTCTTCCTCCTCCATATGAATTAGCAAGTCAAGAAAGAGATTCTGCATTGTTGCGGTACAAGCAGAAGAAGAAAACAAGAAGATACGACAAGCATATAAGGTATGAATCACGAAAAGTTCGGGCGGAGACCAGAACACGAGTTAAGGGCCGATTTGCTAAAATAGAGCACTGA 1059 0.4363 MADSPTNRNPSHKPKRPCDYCSNSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWENHNLSLSSPHERRPLEGFTGCPSVSELLAIVGLQDIGKKSLVLDQDSFGDGFLGYEMEGVSDLFVWDAPSFVSLDDLISSSPSSHNYSAMEVPPLPKNRKAACGRQKEEILSQLREMTKSEPLDYEEYMPSRSLSTDFEHDTKTDIAPRNEWLKESSEPTYQVVPVDTSIKAQTEEIPVKHSASSVGEPLTHMTPSESFKSETSTTLKALPPPYELASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAETRTRVKGRFAKIEH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05484 352 CDD Bbox1_BBX-like 17 60 - -
Vivi6g05484 352 SMART bboxneu5 61 102 IPR000315 GO:0008270
Vivi6g05484 352 SMART bboxneu5 13 60 IPR000315 GO:0008270
Vivi6g05484 352 MobiDBLite consensus disorder prediction 265 293 - -
Vivi6g05484 352 MobiDBLite consensus disorder prediction 274 293 - -
Vivi6g05484 352 CDD Bbox1_BBX-like 60 102 - -
Vivi6g05484 352 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Vivi6g05484 352 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 17 349 - -
Vivi6g05484 352 Pfam CCT motif 308 349 IPR010402 GO:0005515
Vivi6g05484 352 Pfam B-box zinc finger 14 58 IPR000315 GO:0008270
Vivi6g05484 352 Pfam B-box zinc finger 59 102 IPR000315 GO:0008270
Vivi6g05484 352 ProSiteProfiles CCT domain profile. 308 350 IPR010402 GO:0005515
Vivi6g05484 352 ProSiteProfiles Zinc finger B-box type profile. 56 102 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05484 Vivi-Chr6 160418809 160421037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05484 11 323 C2C2-CO-like Transcription Factor Family AT2G47890 41.304 4.10e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vivi6g05484 zf-B_box 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05484 - - cam:101499146 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05484 6 160418809 160421037 Vivi6g05484 6 160418809 160421037 ECH