Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05482 ATGCACCTATTAGGGGAGAAGAGGGAGATACTTCAAAGCACTGTTGATCTTGTTCAAAATAACTTGAACTTAGAGGTGATCTATGGGGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATAGCTAAGAAAGTTATTCAAGAGGGCATTTGCTCTCTGCAGCTAGATCTTCTATGGTGTCAGTCTGGCTCAGGCCAGCTGTGGTGGTTGAATGTGAAGTTATTGGTGATTCCACCAATAATTATCCGAGCAGAGTTTAAAAAATGGGCATTGAACTGCTACAATATAATGTTGTGTTTCAATTTCTTTAAACATAAAAAGTTTCTACCTGAATACAACCTGTTTCAATTTCTTTAA 381 0.3675 MHLLGEKREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKATSIAKKVIQEGICSLQLDLLWCQSGSGQLWWLNVKLLVIPPIIIRAEFKKWALNCYNIMLCFNFFKHKKFLPEYNLFQFL 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05482 126 Gene3D Palm domain of DNA polymerase 2 64 IPR023211 -
Vivi6g05482 126 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 8 56 - -
Vivi6g05482 126 SUPERFAMILY DNA/RNA polymerases 8 56 IPR043502 -
Vivi6g05482 126 ProSitePatterns DNA polymerase family B signature. 28 36 IPR017964 GO:0000166|GO:0003676
Vivi6g05482 126 Pfam DNA polymerase family B 12 55 IPR006134 GO:0000166|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05482 Vivi-Chr6 160398036 160399198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05482 6 56 Core DNA Replication Machinery Family AT5G67100 74.510 2.69e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05482 K02320 - vvo:131612999 111.309