Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05481 ATGCACCTATTAGGGGAGAAGAGGGAGATACTTCAAAGCACTGTTGATCTTGTTCAAAATAACTTGAACTTAGAGGTGATCTATGGGGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATAGCTAAGAAAGTTATTCAAGAGCTAGATCTTCTATGGTGTCAGTCTGGCTCAGGCCAGCTGTGGTGGTTGAATGTGAAGTTATTGGTGATTCCACCAATAATTATCCGAGCAGAGTTTAAAAAATGGGCATTGAACTGCTACAATATAATGTTGTGTTTCAATTTCTTTAAACATAAAAAGTTTCTACCTGAATACAACCTGTTTCAATTTCTTTAA 363 0.3581 MHLLGEKREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKATSIAKKVIQELDLLWCQSGSGQLWWLNVKLLVIPPIIIRAEFKKWALNCYNIMLCFNFFKHKKFLPEYNLFQFL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05481 120 Pfam DNA polymerase family B 12 57 IPR006134 GO:0000166|GO:0003677
Vivi6g05481 120 Gene3D Palm domain of DNA polymerase 2 63 IPR023211 -
Vivi6g05481 120 SUPERFAMILY DNA/RNA polymerases 8 62 IPR043502 -
Vivi6g05481 120 ProSitePatterns DNA polymerase family B signature. 28 36 IPR017964 GO:0000166|GO:0003676
Vivi6g05481 120 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 8 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05481 Vivi-Chr6 160398036 160399198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05481 6 58 Core DNA Replication Machinery Family AT5G67100 71.698 1.08e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05481 K02320 - vvo:131639131 109.768