Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05480 ATGCACCTATTAGGGGAGAAGAGGGAGATACTTCAAAGCACTGTTGATCTTGTTCAAAATAACTTGAACTTAGAGGTGATCTATGGGGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATAGCTAAGAAAGTTATTCAAGAGGGTCTTGAAGTTTTTAGGAAGAAGCATGTATTGGTGTTCATTTCGAGTCTTGATAGCATTGAAGATGAGATTTCACTTTTGAATTCAATCTATGAAAGATTGCAAGAAAACTCAAAAGAATCAATAAAAGGTTTCAATAAAGAAGACTTCAAGATTTTGTGGATCCCCATTAAATGTATGTGTTAG 354 0.339 MHLLGEKREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKATSIAKKVIQEGLEVFRKKHVLVFISSLDSIEDEISLLNSIYERLQENSKESIKGFNKEDFKILWIPIKCMC 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05480 117 Coils Coil 73 93 - -
Vivi6g05480 117 Gene3D Palm domain of DNA polymerase 2 69 IPR023211 -
Vivi6g05480 117 Pfam DNA polymerase family B 12 56 IPR006134 GO:0000166|GO:0003677
Vivi6g05480 117 SUPERFAMILY DNA/RNA polymerases 8 59 IPR043502 -
Vivi6g05480 117 ProSitePatterns DNA polymerase family B signature. 28 36 IPR017964 GO:0000166|GO:0003676
Vivi6g05480 117 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 8 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05480 Vivi-Chr6 160396128 160399198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05480 6 62 Core DNA Replication Machinery Family AT5G67100 68.421 1.79e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05480 K02320 - vvo:131612999 111.309