Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05478 ATGCACCTATTAGGGGAGAAGAGGGAGATACTTCAAAGCACTGTTGATCTTGTTCAAAATAACTTGAACTTAGAGGTGATCTATGGGGATACTGATTCAATAATGATTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATAGCTAAGAAAGTTATTCAAGAGGCTCTGGTCAATGTCCGTGGTGCCGTAGTCTGCAAGGAAGAATGCGATCCATTTGTATCTGTGACTCTTGTGAGGCAGGGTGCTAAACATAATGAAGTGAGAAAGACAATTAGCTTGACCTCTGAGAGTAGTGAACTTCTGTTTTCTGATGTTATTCTTGGAAAATACAGGCTTGAGGTGAAACATAGTTCCCCTGAATCAGTGGCCAAGGAAGATAATTGGTGCTGA 396 0.4066 MHLLGEKREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKATSIAKKVIQEALVNVRGAVVCKEECDPFVSVTLVRQGAKHNEVRKTISLTSESSELLFSDVILGKYRLEVKHSSPESVAKEDNWC 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05478 131 Gene3D Palm domain of DNA polymerase 2 73 IPR023211 -
Vivi6g05478 131 SUPERFAMILY DNA/RNA polymerases 8 58 IPR043502 -
Vivi6g05478 131 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 8 56 - -
Vivi6g05478 131 ProSitePatterns DNA polymerase family B signature. 28 36 IPR017964 GO:0000166|GO:0003676
Vivi6g05478 131 Pfam DNA polymerase family B 12 55 IPR006134 GO:0000166|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05478 Vivi-Chr6 160395681 160399204 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05478 6 90 Core DNA Replication Machinery Family AT5G67100 52.941 6.21e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05478 K26500 - vvo:131612999 247.669