Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05462 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGTGAAGAACAGGTTCTAAATAATCTCAATGATTCAAGTTCAGGACCATCTGCTGCTTCTAATAGCAATGGTTCCAGTAATCAACAACAAGCCAAGAAGAAAAGAAATCTTCCTGGCACACCAGATCCGAGTGCTGAAGTTGTAGCTTTATCACCAACAACATTAATGGCGACAAATAGATTTGTGTGTGAGATATGCAACAAAGGCTTCCAAAGAGATCAAAATCTTCAGTTACACCGTAGAGGTCACAATCTTCCATGGAAACTTAGGCAGAGAACAAGCACAGAAGTGAAGAAAAAGGTGTATGTGTGTCCCGAATCTTCGTGTGTCCACCATAACCCCGCTCGCGCGTTAGGCGACCTTACTGGTATCAAAAAACATTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGATAAGTGCTCTAAAAGATATGCTGTTCAATCTGATTGGAAAGCACATCAGAAAACTTGTGGCACAAGGGAATACAAATGTGATTGTGGAACCATATTTTCTAGGAGAGACAGTTTTATAACTCATAGAGCTTTCTGTGATGCATTAACTGAAGAAAACCACAGAGTGAACCAAGGATTAACTAGTGGCATGCCACCAAACTTACAAAATCAAATGCATGATCCAATCTCTACTATGCCACTAAAAACTATTTCCAGCATTTCATCGGAATTAATCAACGACTCGCTGAAATCGCCAACTCAAGAACATGTTCCAATACAATTCAGATCAACCAATGCAACCAATGCATGTGGTGGCATGTTTTCAACAAGTGCAGGTGCGCTTTTCGGTGGTCCGAAAACCTTACCTCCCTCTTCTTCATCTCTTCAACTCAGTTCAAGTTCCAATAGCTACAATTACTTCAACGATAGCAAAATCGGAGGACTAATTTCTGGCTCGGTTCAAATGTCGGCTACGGCTTTGTTACAAAAAGCAGCACAGATGGGTGCTACTGCAAGCAATAGTGTTAACTCTTCCATGATGCAGAAAAGCTTTGTTAGTAGTATGATTAGTCCTAATCATGATCATGTTTCTGGTTCCATCATGATGCAGCATAACCAAAATCAAAATCAACCCTCTTATGAACAATTCAATCCACTACTACACCACAATGATTTATCTAACATGGCTGGTGTTAGTGGTGGTGGAGCATTTACCAACCAACTGTTTCAAAAAGAACAGCAAGAAATTTCATTACTGTTTGATAATAATGCTAATGACATGGGAATGTTTGGCCAAGGATTGATGAAAAATGTGGCACAAGAGGTTAGTGATGTGGCAAGAGTGCATGATTTCTTGGGAATTGGAGGTTCAAATTCAAGTCTGCATGAACCACAACAACATAGGTTGGAAATTATGAATGATTTCCATCATCATCATAATCATCATCTTCCACATCAGGATTCACCTATGGAGAAATCAATTTGGGATGATTGA 1500 0.3967 MSNISGDEGSFSSGNNGEEQVLNNLNDSSSGPSAASNSNGSSNQQQAKKKRNLPGTPDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKKVYVCPESSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENHRVNQGLTSGMPPNLQNQMHDPISTMPLKTISSISSELINDSLKSPTQEHVPIQFRSTNATNACGGMFSTSAGALFGGPKTLPPSSSSLQLSSSSNSYNYFNDSKIGGLISGSVQMSATALLQKAAQMGATASNSVNSSMMQKSFVSSMISPNHDHVSGSIMMQHNQNQNQPSYEQFNPLLHHNDLSNMAGVSGGGAFTNQLFQKEQQEISLLFDNNANDMGMFGQGLMKNVAQEVSDVARVHDFLGIGGSNSSLHEPQQHRLEIMNDFHHHHNHHLPHQDSPMEKSIWDD 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05462 499 MobiDBLite consensus disorder prediction 480 499 - -
Vivi6g05462 499 SMART c2h2final6 153 173 IPR013087 -
Vivi6g05462 499 SMART c2h2final6 118 148 IPR013087 -
Vivi6g05462 499 SMART c2h2final6 77 99 IPR013087 -
Vivi6g05462 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Vivi6g05462 499 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 469 IPR031140 -
Vivi6g05462 499 MobiDBLite consensus disorder prediction 1 51 - -
Vivi6g05462 499 Gene3D Classic Zinc Finger 73 100 - -
Vivi6g05462 499 Gene3D Classic Zinc Finger 110 201 - -
Vivi6g05462 499 Pfam Zinc finger, C2H2 type 77 99 IPR013087 -
Vivi6g05462 499 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Vivi6g05462 499 SUPERFAMILY beta-beta-alpha zinc fingers 76 174 IPR036236 -
Vivi6g05462 499 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
Vivi6g05462 499 FunFam protein indeterminate-domain 12-like 56 124 - -
Vivi6g05462 499 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05462 Vivi-Chr6 160180501 160183074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05462 24 341 IDZ Gene Family AT3G50700 53.143 7.03e-112 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g05462 zf-C2H2 0.005 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05462 6 160180501 160183074 Vivi6g05462 6 160180501 160183074 ECH