Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05431 ATGAAGTTCTGCAAAAAATACCAGCAATACATGCAAGGCCAGGAGAAGAAGAAGCTTCCTGAAGTTGGATTCAAGAAGCTCAAGAAGATCTTGAAGAAGTGCCGTAGAGATCATTCTCACTCTCATCCTCAATCTCAATCCCATATAGCTTCTCAAACCTGTCCCAACCAGTGCTCAGTGTGTGATGGAACGTTTTTCCCTTCACTTCTGAGTGAAATGTCTGAGATAGTTGGTTGCTTTAATCAACGTGCACAGAAATTGCTTGAGCTTCATCTTGCTTCTGGTTTCAAAAAGTACCTTTTATGGTTCAAAGGCAAGTCTAATAAAAATCACACTGCTCTTATTCAAGAAGGTGAAGATCTTGTTACTTATGCACTCATCAACGCTACCGCAATCCGAAAAATTCTAAAGAAATATGATAAGGTTCATTATTCGAAACAAGGGCAATTGTTTAAGTCACAGGTCCAAAGTATGCACAAGGAAATTCTTCAAAGTCCATGGCTTTGTGAGCTTATGGCTTTCCACATCAATTTAAGAGAAACTAAGATCAGTTCAAGGAAGGAAACAGCTTTGTTTGATGAATGTTCTCTAACATTTAAGGATGGAAAACCATCACTTACTTGTGAGCTTTTTGATTCTGTCAAAATTGATATTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGTGGTCATATATTCTGTTACATTTGTGCTTGCTCGGCTGCATCGGTATCTATTGTCGATGGGCTTAAGACCGCAGATCCTAAAGAAAAATGTCCTCTATGCCGCGAGCGTGCGGCTTATGAAGGCGCGGTGCATTTGGAAGAACTAAATATTCTGTTAGGTCGGAGCTGCCAGGAATATTGGGAACAAAGGCTTCAATCTGAGAGAGTAGAAAGGATTAAGCAAATAAAGGAACATTGGGATTCACAGTGTAGAGCTTTCATGGGAGTTTAA 981 0.3976 MKFCKKYQQYMQGQEKKKLPEVGFKKLKKILKKCRRDHSHSHPQSQSHIASQTCPNQCSVCDGTFFPSLLSEMSEIVGCFNQRAQKLLELHLASGFKKYLLWFKGKSNKNHTALIQEGEDLVTYALINATAIRKILKKYDKVHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKISSRKETALFDECSLTFKDGKPSLTCELFDSVKIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKTADPKEKCPLCRERAAYEGAVHLEELNILLGRSCQEYWEQRLQSERVERIKQIKEHWDSQCRAFMGV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05431 326 ProSiteProfiles SPX domain profile. 1 153 IPR004331 -
Vivi6g05431 326 CDD SPX_BAH1-like 2 149 - -
Vivi6g05431 326 SMART ring_2 222 270 IPR001841 -
Vivi6g05431 326 SUPERFAMILY RING/U-box 215 276 - -
Vivi6g05431 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 325 IPR033326 -
Vivi6g05431 326 ProSitePatterns Zinc finger RING-type signature. 237 246 IPR017907 -
Vivi6g05431 326 CDD RING-HC_BAH1-like 212 285 - -
Vivi6g05431 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 324 IPR013083 -
Vivi6g05431 326 ProSiteProfiles Zinc finger RING-type profile. 222 271 IPR001841 -
Vivi6g05431 326 Pfam Zinc finger, C3HC4 type (RING finger) 219 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05431 Vivi-Chr6 159842925 159845092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05431 219 271 C3H Transcription Factor Family AT4G28270 41.379 1.57e-06 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05431 6 159842925 159845092 Vivi6g05431 6 159842925 159845092 ECH