Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05428 ATGAGCAGACGTTCGAGCAGAACCGTCTATGTTGGGAATCTTCCCGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTATGAAGTATGGACACATAACTCACATTGACCTAAAGGTTCCGCCAAGGCCCCCTGGCTATGCATTTGTAGAGTTTGATGATGCTCAAGATGCTGAGGATGCAATTCGCGGGCGTGATGGTTATGATTTTGACGGGCACCGATTACGGGTGGAGGCTGCTCATGGTGGCCGTGGTACTGGTAATTCATCTTCAAGAGATCGACATAGTAGTCAAAGCAATGGCAGGGGTGGACGTGGAGTATCCAGGCGCTCTGAATATCGGGTTCTAGTCAGTGGATTGCCATCTTCTGCATCCTGGCAGGATCTCAAGGATCACATGCGAAAAGCAGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGGGGTACTACTGGAATTGTGGATTACACAAACTACGATGACATGAAATATGCTATCAAAAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGTCTTATGTTCGCGTGAGGGAATATGATTCAAGACGGGACTCTAGAAGTCCTAGTCGTGGCCCATCTCATTCTAGAGGAAGAAGCTACAGCCGTAGCCGCAGCCGTAGCCGCAGTCGCAGTGACAGTCCTGTGCGGAGCCCAAGCAAATCTCCAAAGGGTAAATCCTCCCAACGATCACCTGCTAAATCTCCCGCCAGATCGGTTTCTCGTTCTCGCTCAAGATCTAGGTCCCGTTCTTTATCAGGATCACGGTCAAGGTCAAGGTCTCCATTACCTCTGCGTAACAAAAGCCCCATAAAGCGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAAGAGTCCAAGTAGGAGCAGAAGCAAAAGTTTATCCAGGTAA 915 0.4852 MSRRSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFDDAQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGTGNSSSRDRHSSQSNGRGGRGVSRRSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRVREYDSRRDSRSPSRGPSHSRGRSYSRSRSRSRSRSDSPVRSPSKSPKGKSSQRSPAKSPARSVSRSRSRSRSRSLSGSRSRSRSPLPLRNKSPIKRSASRSPSRSKSPSRSRSKSLSR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05428 304 CDD RRM1_SF2_plant_like 8 78 - -
Vivi6g05428 304 MobiDBLite consensus disorder prediction 224 249 - -
Vivi6g05428 304 Gene3D - 113 190 IPR012677 -
Vivi6g05428 304 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Vivi6g05428 304 MobiDBLite consensus disorder prediction 186 304 - -
Vivi6g05428 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Vivi6g05428 304 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 266 - -
Vivi6g05428 304 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 112 - -
Vivi6g05428 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Vivi6g05428 304 MobiDBLite consensus disorder prediction 80 110 - -
Vivi6g05428 304 SMART rrm1_1 8 78 IPR000504 GO:0003723
Vivi6g05428 304 SMART rrm1_1 114 185 IPR000504 GO:0003723
Vivi6g05428 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Vivi6g05428 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vivi6g05428 304 CDD RRM2_SF2_plant_like 113 188 - -
Vivi6g05428 304 MobiDBLite consensus disorder prediction 186 201 - -
Vivi6g05428 304 MobiDBLite consensus disorder prediction 280 304 - -
Vivi6g05428 304 MobiDBLite consensus disorder prediction 84 105 - -
Vivi6g05428 304 Gene3D - 2 112 IPR012677 -
Vivi6g05428 304 FunFam serine/arginine-rich splicing factor SR34A-like 113 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05428 Vivi-Chr6 159820714 159825628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05428 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 3.40e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05428 K12890 - gmx:100796900 336.65