Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05415 ATGCTTCGCACTTACTTATACCTCTGCCACCTTCGCAATCAACGTTTGTCTTCTTTAACTAAAGAACGTATTGACCCTACCATTCTCAAATCCTTTCCAATCTTCACTTACTCTTCCTCCGCCGTAAGCCATACTCTCCACGACTGCGCTATCTGTTTGTCGGAGTATACGGACGGCGATGAATGTCGTATGCTCCCAAATTGTAGCCATGTTTTTCATTCTCAATGTATTGACGAGTGGTTTACTTCTCAGTCTAATTGTCCTCTCTGCCGAGCTCCGATCCAACCGGTGACGGTTGAGCCTCATGTTGAACCGGGCTCTGCTTCGGGTTCAGAAGAACCGGGTGGACGTAGTTCGAATTTTCCTGAACCGATTGGGTGTCCAAGAAGACCGTTTAGAGTAATTGTCGAGTTGCCATCAGAGGTTTTTCGGATGGAATCTCATACCCGATGA 453 0.468 MLRTYLYLCHLRNQRLSSLTKERIDPTILKSFPIFTYSSSAVSHTLHDCAICLSEYTDGDECRMLPNCSHVFHSQCIDEWFTSQSNCPLCRAPIQPVTVEPHVEPGSASGSEEPGGRSSNFPEPIGCPRRPFRVIVELPSEVFRMESHTR 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05415 150 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 105 - -
Vivi6g05415 150 CDD RING-H2_EL5-like 48 91 - -
Vivi6g05415 150 SMART FANCL_C_2 45 99 - -
Vivi6g05415 150 Pfam Ring finger domain 48 91 IPR001841 -
Vivi6g05415 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 99 IPR013083 -
Vivi6g05415 150 ProSiteProfiles Zinc finger RING-type profile. 49 91 IPR001841 -
Vivi6g05415 150 SMART ring_2 49 90 IPR001841 -
Vivi6g05415 150 SUPERFAMILY RING/U-box 30 97 - -
Vivi6g05415 150 FunFam E3 ubiquitin-protein ligase ATL6 12 97 - -
Vivi6g05415 150 MobiDBLite consensus disorder prediction 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05415 Vivi-Chr6 159635109 159635561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05415 18 96 Rapid Response to Elicitors AT4G15975 48.101 4.37e-22 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05415 - - vvo:131615157 315.849