Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05414 ATGTTTTCAGAATCCGTCTTGGAAACAGATTATACCCTTAGCAAGGACCTGATAGGTACTTCCATCCTTACATTTATACTCTTTCTCATCATCCTTCGTACTTACTTTTACCTCCGCCACCATCGCAATCAACGTTTGTTCTCTGCAAGTTCAAACTCTCTTACGACTCCCACTTTTACTGAAGAACGTCTTGATCCTACCGTTCTCAAATCCCTTCCCATCTTTACCTACTCTTCTTCCGCCGTCCGCGGTACTTTTCATGAGTGTGCTATCTGTTTGTCGGAGTATACCGACGGCGATGAATGTCGTATGCTTCCAAACTGTAGCCATGTTTTTCATTCTCAATGTATTGACGGGTGGTTTACTTCTCACTCTAATTGTCCTTTATGTAGAGCTCCGGTCCAACCGGTGACGGTTGAGTCTCAGGTTGAACCGGGGTTTGTTTCGGGTTTAGAAGGACCGGGTGAGGGTAGTTCGAATTTTCCAGAACCGATTGGGTGTCCGAGAAGACCGTTTAGAGTAATTGTTGAGTTTCCAACAGAGGTTTTTCGGATGGAATCTCATACCCGAGGATAA 576 0.4479 MFSESVLETDYTLSKDLIGTSILTFILFLIILRTYFYLRHHRNQRLFSASSNSLTTPTFTEERLDPTVLKSLPIFTYSSSAVRGTFHECAICLSEYTDGDECRMLPNCSHVFHSQCIDGWFTSHSNCPLCRAPVQPVTVESQVEPGFVSGLEGPGEGSSNFPEPIGCPRRPFRVIVEFPTEVFRMESHTRG 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05414 191 FunFam E3 ubiquitin-protein ligase ATL6 52 137 - -
Vivi6g05414 191 SMART ring_2 89 130 IPR001841 -
Vivi6g05414 191 CDD RING-H2_EL5-like 88 131 - -
Vivi6g05414 191 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Vivi6g05414 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 141 - -
Vivi6g05414 191 SUPERFAMILY RING/U-box 68 137 - -
Vivi6g05414 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 140 IPR013083 -
Vivi6g05414 191 Pfam Ring finger domain 88 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05414 Vivi-Chr6 159628501 159629076 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05414 11 187 Rapid Response to Elicitors AT3G16720 32.301 6.87e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05414 - - vvo:131615155 276.174