Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05413 ATGTTTTCGGAAACTCCTTTTGAAGACGACTATGCCCTTATCGGCAAGAACATGATAGGTCCTTTCATCGTTTTAGTTATTTTGTTTTTCATCATGCTTCGCACTTATTTCTACCACCGTCACCTTCGCAATCAAAGTTTGTCCTCTTCAAGTTCAAACTCTCTCACCACTCCCACCACTTTCACAGAAGAACGTCTTGACCCTTCGGTTCTCAAATTCCTTCCCATCTTCACTTACTCTTCCTCCGCCGTCTCCTGTACTCTCCATGACTGTGCTATATGTTTGTCGGAGTATACGGATGGCGATGAATGTCGTAAGCTTCCAAACTGTGACCATGTTTTTCATTCTCAATGCATTGACAAATGGTTTACTTCTCAGTCTAATTGTCCGCTTTGTCGAACTCCGGTCCAACCGGGGACGGTTGAGTCTCATATTGAACTGGGGTCTGCTTCAGGTTCAGAAGAATCGGGTGAAGGTAGTTCGAATTTTCCTGAACCGATTGAGTGTCCAAGAAGACCGTTTAGAGTAATTGTTGAGTTGCCATCAGAGGTTTTTCAGATGAGATTTCATACCCAAGGATCAGAAGTTTTTCGGATGGAATCTCATACTCGAGAATAA 618 0.432 MFSETPFEDDYALIGKNMIGPFIVLVILFFIMLRTYFYHRHLRNQSLSSSSSNSLTTPTTFTEERLDPSVLKFLPIFTYSSSAVSCTLHDCAICLSEYTDGDECRKLPNCDHVFHSQCIDKWFTSQSNCPLCRTPVQPGTVESHIELGSASGSEESGEGSSNFPEPIECPRRPFRVIVELPSEVFQMRFHTQGSEVFRMESHTRE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05413 205 Pfam Ring finger domain 90 133 IPR001841 -
Vivi6g05413 205 MobiDBLite consensus disorder prediction 148 167 - -
Vivi6g05413 205 CDD RING-H2_EL5-like 90 133 - -
Vivi6g05413 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 140 IPR013083 -
Vivi6g05413 205 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 7 189 - -
Vivi6g05413 205 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Vivi6g05413 205 SMART ring_2 91 132 IPR001841 -
Vivi6g05413 205 SUPERFAMILY RING/U-box 90 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05413 Vivi-Chr6 159619068 159619685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05413 11 174 Rapid Response to Elicitors AT3G16720 33.803 3.17e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05413 - - vvo:131615155 390.193