Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05411 ATGGCTTCTAAGATATGTAATCCCCTCTCAATATTTTTCATTCTCTTATTCTCCTCTATAGCATTTTCAGACACCATTAGTCCAAATCCAGTAACAACTACCTCGCCCGGAACCGCATGCAAGTCCACCCCGGATCCAACCTATTGCAGATCCGTTCTGCCTACACAGAACGGAAACGTTTACGATTATGCTCGATTCTCCGTCAGGAAATCATTATTACAGTCACGAAAATTCTCAAACCTAATCAACATATATCTCCAGCAGCGTCGCTCGACGCTTTCCCCCACCGCTATCCGTGCTCTCCAGGATTGCCAATCGCTCAGTGACCTCAACTTCGATTTTCTTTCGAGTTCTTTTCAAACTGTTAACAAAACAGCAAAGTTTCTTCCAAATTTACAAGCTGACAACATCCAAACTCTACTCAGTGCCATTCTAACCAACCAACAAACATGCTTAGATGGTCTTAAAGACATTTCTTCCGCTAATGGAGTCACAATCCCAATTTCCAACGACACCAAACTCTATAGCGTCTCTCTCGCTTTCTTCACCAAAGGTTGGGTTCCCAAAACCAAACCAAAAGCCTCTTTTCATAATAACTTACATCCCTCATTTCGTAACGGGCGATTACCACTTAAAATGTCGAGCAAGACTCGCGCAATTTATGAATCCGTTAGTCGGAGAAAGCTTCTTCAAAGTAATCAAGTTGGTGAGAATGTTGTCGTCAGAGATATCGTGACAGTTAGTCAAGATGGAAGTGGAAATTTTACTACCATCAATGATGCTATTGCTGCAGCTCCTAATAAATCTGTTTCTACTGATGGCTATTTCTTGATCTATGTTACTGCTGGTGTTTATGAAGAGTATGTCAATATTGATAAGAAAAAGACTTATTTAATGATGATCGGAGATGGTATCAACAAGACTATCATCACCGGAAATCATAGCGTTGTCGATGGCTGGACCACATTCGGCTCCCCAACTTTAGCTGTGGTTGGGCAAGGATTCGTCGGTGTAAACATGACGATCCGAAACACCGCGGGTGCGATAAAGCACCAAGCAGTAGCACTTCGTAACGGAGCAGATTTATCCACCTTCTACAGTTGCAGTTTCGAAGGCTACCAAGACACACTATACACACATTCCTTAAGACAATTCTACAGAGAATGCGACATCTACGGAACAGTTGATTTCATCTTCGGGAACGCAAAGGTTGTCTTCCAAAACTGTAATCTCTATCCTCGTCTTCCAATGAGCGGACAATTCAACGCCATAACAGCGCAAGGCCGAACCGATCCAAACCAAGACACAGGTACATCAATCCACAACTGTACAATCAAAGCTTCCGACGATTTAGCTTCGAGCAACGGTACTGTTTCGACGTACCTAGGAAGACCATGGAAGGAATATTCTAGAACAGTTTATATGCAAACATTTATGGATAATGTTGTTGATGGTTCTGGATGGCGTGCTTGGGATGGTGAATTTGCATTGAGTACTTTGTATTATGCTGAGTTTAATAACACAGGACCAGGGTCTAATACTGATGGAAGAGTGACGTGGCAAGGTTATCATGTGATTAATGCTACTGATGCTGCTAATTTTACTGTGTCGAATTTCTTGCTGGGTGATAATTGGTTGCCTCAGACAGGGGTGTCTTATGCTAATAATTTAATTAATAATTAA 1683 0.4195 MASKICNPLSIFFILLFSSIAFSDTISPNPVTTTSPGTACKSTPDPTYCRSVLPTQNGNVYDYARFSVRKSLLQSRKFSNLINIYLQQRRSTLSPTAIRALQDCQSLSDLNFDFLSSSFQTVNKTAKFLPNLQADNIQTLLSAILTNQQTCLDGLKDISSANGVTIPISNDTKLYSVSLAFFTKGWVPKTKPKASFHNNLHPSFRNGRLPLKMSSKTRAIYESVSRRKLLQSNQVGENVVVRDIVTVSQDGSGNFTTINDAIAAAPNKSVSTDGYFLIYVTAGVYEEYVNIDKKKTYLMMIGDGINKTIITGNHSVVDGWTTFGSPTLAVVGQGFVGVNMTIRNTAGAIKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAKVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQDTGTSIHNCTIKASDDLASSNGTVSTYLGRPWKEYSRTVYMQTFMDNVVDGSGWRAWDGEFALSTLYYAEFNNTGPGSNTDGRVTWQGYHVINATDAANFTVSNFLLGDNWLPQTGVSYANNLINN 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05411 560 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Vivi6g05411 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 184 IPR035513 -
Vivi6g05411 560 SUPERFAMILY Pectin lyase-like 241 554 IPR011050 -
Vivi6g05411 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 184 IPR035513 -
Vivi6g05411 560 Pfam Plant invertase/pectin methylesterase inhibitor 38 180 IPR006501 GO:0004857
Vivi6g05411 560 FunFam Pectinesterase 238 557 - -
Vivi6g05411 560 NCBIfam pectinesterase inhibitor domain 9 183 IPR006501 GO:0004857
Vivi6g05411 560 Gene3D - 239 557 IPR012334 -
Vivi6g05411 560 FunFam Pectinesterase 37 184 - -
Vivi6g05411 560 SMART PMEI_2 31 181 IPR006501 GO:0004857
Vivi6g05411 560 PANTHER PECTINESTERASE 20 547 - -
Vivi6g05411 560 CDD PMEI-like_3 38 186 - -
Vivi6g05411 560 Pfam Pectinesterase 245 543 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05411 Vivi-Chr6 159574893 159577065 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05411 9 558 Carbohydrate Esterase AT4G02330 62.742 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05411 K01051 - gmx:100800971 909.057