Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05410 ATGGCCTTCAAGAACTTTTCCATTCTCACACTCTCCATTTTTCTTTCATTTTCCATTTTAGCATCATTTCCATTATCTTCCATAGCTGATAAACCTAACATCCCACCACAAAAAATATGCGAGTCCACCGTAGACCCTCCCTTTTGCAAAACCCTACTTGCTAAACAAAACGGCACCGTAATTGACTACGGTCGTTTCTCTGTCCGAAAATCCTTATCTCAATCAAGAAAATTCTTAAACTCAGTTCTTTCACATCTTAAAAAGAAATCATCACTATCACAATCCACAATTTCAGCTCTTACAGATTGCAAATTCCTCGCTCAACAAAACTTCGAATTCTTATCAAACACGCACCAAACCGCTAACAAAACTAGCGATGTTCTTCCCGTTTCACAAGGTGAAGAATTTCAAACCTTGCTTAGTGCTGTTTTAACAAACACACAAACATGTTTAGAAGGTTTGAATACAACTTCAGATCAAGCAGTTGTTAACGATTTATCATCAACAATCTCCAACGATGCAAAGATTCATAGTGTGTCACTTGCACTTTTCTTAAAGGGTTGGGTTGGTGATAACAAAAAACAAACATCATTCTCACACAACGGAAGAAATCTAGGGTTTCGTAACGGTCGTTTACCGTTGAACATGTCGGATAAAACACGTGCCCGTTATGATTCGGCTAAAAGACATGGGAGAAAACTACTTCAAACGATTGATGAAAGTGTAGTAGTGAGTGATATTGTGATTGTTAATCAAGATGGAAGTGGAAACTTTACAACTATTAATGATGCTATCAATATTGCACCAAATAACAGTGTTGCTGGTAATGGTTACTTTTTGATTTTTGTTGCTGAGGGTGTTTATCAAGAATATGTTTCTATAACTAGCAAAAAGAAGTACTTGATGATGGTTGGAGAAGGGATTAATCGAACGATTATCACCGGTGATCACAATGTTGTTGATAATTTTACTACGTTCAACTCAGCTACATTCGCTGTGGTGGCACAAGGTTTCTTAGCAGTGAACATGACATTCCGCAACACTGCCGGACCAAGCAAACACCAAGCAGTAGCAGTTCGCAACGGAGCAGATTTATCGACCTTCTACAGCTGCAGCTTCGAAGGTTACCAAGACACATTATACACACATTCCATGCGACAATTCTATCGCGAATGTGACATCTATGGAACCGTCGATTTCATATTCGGAAACGCAGCGGTTGTTTTCCAGAACTGCAATCTCTATCCTCGCCTTCCCAACCCGGGACAGTTCAACGCTATAACGGCTCAAGGCCGAACCGATCCAAATCAAAACACAGGAACTTCTATACATAACTCAACTATAAAAGCTGCCGATGATTTAGCGAATATTACTACGGTGAAAACATATCTTGGAAGGCCATGGAAACAGTATTCAAGGACCGTTTACCTGCAATGTTTTATGGACAGTTTGATAGATCCTTCAGGATGGCATGATTGGAGTGGAGATTTTGCATTGAGTACATTGTTTTATGCAGAGTTTAATAATACAGGAGATGGTTCAGATACTACAATGCGAGTGAATTGGGTTGGATATCATGTTATTGATGACACTGATGCTGCTAATTTTACAGTGTTTAATTTTTTGGGTGGAGATAATTGGTTGCCTCAAACTGGTGTTCCATACTCAAGTGGATTGATATAA 1683 0.3904 MAFKNFSILTLSIFLSFSILASFPLSSIADKPNIPPQKICESTVDPPFCKTLLAKQNGTVIDYGRFSVRKSLSQSRKFLNSVLSHLKKKSSLSQSTISALTDCKFLAQQNFEFLSNTHQTANKTSDVLPVSQGEEFQTLLSAVLTNTQTCLEGLNTTSDQAVVNDLSSTISNDAKIHSVSLALFLKGWVGDNKKQTSFSHNGRNLGFRNGRLPLNMSDKTRARYDSAKRHGRKLLQTIDESVVVSDIVIVNQDGSGNFTTINDAINIAPNNSVAGNGYFLIFVAEGVYQEYVSITSKKKYLMMVGEGINRTIITGDHNVVDNFTTFNSATFAVVAQGFLAVNMTFRNTAGPSKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPNPGQFNAITAQGRTDPNQNTGTSIHNSTIKAADDLANITTVKTYLGRPWKQYSRTVYLQCFMDSLIDPSGWHDWSGDFALSTLFYAEFNNTGDGSDTTMRVNWVGYHVIDDTDAANFTVFNFLGGDNWLPQTGVPYSSGLI 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05410 560 Pfam Pectinesterase 248 545 IPR000070 GO:0030599|GO:0042545
Vivi6g05410 560 FunFam Pectinesterase 241 559 - -
Vivi6g05410 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 186 IPR035513 -
Vivi6g05410 560 Gene3D - 246 560 IPR012334 -
Vivi6g05410 560 PANTHER PECTINESTERASE 20 549 - -
Vivi6g05410 560 Pfam Plant invertase/pectin methylesterase inhibitor 37 183 IPR006501 GO:0004857
Vivi6g05410 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 184 IPR035513 -
Vivi6g05410 560 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Vivi6g05410 560 SUPERFAMILY Pectin lyase-like 243 558 IPR011050 -
Vivi6g05410 560 CDD PMEI-like_3 39 188 - -
Vivi6g05410 560 SMART PMEI_2 31 183 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05410 Vivi-Chr6 159551628 159553799 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05410 8 560 Carbohydrate Esterase AT4G02330 58.537 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05410 K01051 - gmx:100813051 801.971