Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05408 ATGAGAGGAAAACCAGCATTGCTAGCTCTTATACCAATCCTCACCACAGTTTTTGTTCTACTATTTTCAGTAACCAATTTCTCAAAACTAGCAACAACAAAAACAACCAAACATCTTCATTTCCAAAACCATCTTCAAGTAGCAAATTCAGCATGCGAAGGAACACTCTATCCAGACCTTTGTGTCTCAACTTTATCCACATTCCCAGATCTTACCAAAAAAACAATCCCACAATTGATATCTTCCATCCTCAACTACACCATAAAAGAAGTTAAACAATCTTCCTCCAATGTCACCGGTCTTCGAGTCCGAACCAGAAGTCTCAAAAAAACACTCGAACAAAGAGCTCTTGAAGATTGCGCGAATCTCTTCGACACCACAATTGCAGAACTCAAAACAACCATTTCTGATCTCTCTCAAACTCCAAGTCCAACCACAATAGGTTCCACCGATAAGCGCAACTGTCAAACGCTACTCAGCGGCGCAATGACGAACATGTACACGTGTTTGGATGGTTTTGCGTATAGTAAAAGTAACATAAGACACAAAATTGAGAATAGGTTGTATGATATTTCTAAACACGTTAGTAATACACTTGCCATGTTGAAGAAAGTCCCCGGAGTGAAGTCCAAAACTTCGAACTCCGAGGCTTTTCCTGAATATGGCGAGGTGAAAGACGGCTTTCCTTCGTGGCTGACCAATAAAGATCGGAAGCTACTACAAGTTGCAGTAAATCAAACCAAATTTAATCTGGTGGTTGCTAAAGATGGTACAGGAAATTTTTCCACTATAGGAGAAGCATTGTCTGCAGCTCCAAATTCTAGTACAACTAGGTTTGTGATATATATAAAAGCTGGGGCTTATTTGGAGAATGTGGAAGTGATAAGGAAAAAGCCTAATTTGATGTTGGTTGGAGATGGAATTGGGAAGACAGTTGTGAAGGCAAGTAGAAATGTGGTAGATGGGTGGACCACTTTTCAATCAGCTACTTTTGCTGTTGTGGGAGACAGATTCATAGCCAAGGGTATAACCTTTGAGAACTCAGCTGGAGCTAGCAAACATCAAGCCGTGGCCGTGAGAAGCGGCGCCGATTTCTCAGCCTTCTACCAATGCAGCTTTGTTGCTTACCAAGACACACTCTATGTCCACTCCCTCCGCCAATTCTACCGCGAATGCGATGTTTATGGCACGGTAGACTTCATCTTTGGCAACGCGGCCGTAGTTTTCCAAAACTGCAACCTATACGCGCGCAAACCCGATCCAAACCAAAAGAACCTCTTCACTGCACAGGGCAGAGAAGATCCTAACCAAAACACAGGAATTTCAATCTTGAACTGTAAGGTTGCGGCTGCAGCGGATTTGATTCCGGTAAAATCAACGTTCAAGAGTTACCTCGGCCGCCCTTGGAAAAAATACTCGAGGACAGTTTATCTGAATTCTCTTATAGAGGATTTGATAGATCCGGCGGGATGGTTGGAGTGGAATGGAACATTTGCATTGGACACATTATACTATCGTGAGTATAATAATCGGGGTCCGGGTTCGAACACGAGTGCTAGGGTTAAATGGCCAGGTTATAAAGTTATTACTAATGCAACTGAGGCAAGTCAATTCACTGTTAGGCAATTTATTCAAGGCCCTGAGTGGTTGAACTCTACTGGTATTCCATTTTTTCTTGATTTGAGTTGA 1689 0.4239 MRGKPALLALIPILTTVFVLLFSVTNFSKLATTKTTKHLHFQNHLQVANSACEGTLYPDLCVSTLSTFPDLTKKTIPQLISSILNYTIKEVKQSSSNVTGLRVRTRSLKKTLEQRALEDCANLFDTTIAELKTTISDLSQTPSPTTIGSTDKRNCQTLLSGAMTNMYTCLDGFAYSKSNIRHKIENRLYDISKHVSNTLAMLKKVPGVKSKTSNSEAFPEYGEVKDGFPSWLTNKDRKLLQVAVNQTKFNLVVAKDGTGNFSTIGEALSAAPNSSTTRFVIYIKAGAYLENVEVIRKKPNLMLVGDGIGKTVVKASRNVVDGWTTFQSATFAVVGDRFIAKGITFENSAGASKHQAVAVRSGADFSAFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPDPNQKNLFTAQGREDPNQNTGISILNCKVAAAADLIPVKSTFKSYLGRPWKKYSRTVYLNSLIEDLIDPAGWLEWNGTFALDTLYYREYNNRGPGSNTSARVKWPGYKVITNATEASQFTVRQFIQGPEWLNSTGIPFFLDLS 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05408 562 FunFam Pectinesterase 244 561 - -
Vivi6g05408 562 SMART PMEI_2 43 201 IPR006501 GO:0004857
Vivi6g05408 562 SUPERFAMILY Pectin lyase-like 247 559 IPR011050 -
Vivi6g05408 562 PANTHER PECTINESTERASE 20 551 - -
Vivi6g05408 562 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Vivi6g05408 562 CDD PMEI-like_3 50 207 - -
Vivi6g05408 562 Gene3D - 244 561 IPR012334 -
Vivi6g05408 562 NCBIfam pectinesterase inhibitor domain 17 204 IPR006501 GO:0004857
Vivi6g05408 562 FunFam Pectinesterase 44 206 - -
Vivi6g05408 562 Pfam Plant invertase/pectin methylesterase inhibitor 49 201 IPR006501 GO:0004857
Vivi6g05408 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 205 IPR035513 -
Vivi6g05408 562 Pfam Pectinesterase 250 546 IPR000070 GO:0030599|GO:0042545
Vivi6g05408 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 207 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05408 Vivi-Chr6 159489087 159492519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05408 76 561 Carbohydrate Esterase AT4G02320 55.000 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05408 K01051 - gmx:100813592 830.476