Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05404 ATGGTTTCGCTCAAACTCCAAAAACGTCTCGCCGCCAGCGTCCTCAAGTGCGGAAGGGGAAAGGTCTGGCTCGATCCAAACGAGGGAAATGAGATCTCCATGGCTAATTCCCGCCAAAACATAAGGAAGCTGGTTAAGGATGGGTTTATCATCAGGAAACCTACCAAGATTCACTCCAGATCACGTGCTCGTCGTATGAAGGAAGCTAAGAGGAAGGGAAGACACTCTGGATATGGTAAGCGTAAGGGTACCAGGGAGGCAAGGCTTCCAACCAAGATCCTTTGGATGAGGAGAATGCGCGTGCTCAGACGTTTGCTCCGCAAGTACCGTGAGTCTAAGAAGATTGACAAGCATATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTGTTTAAGAACAAGAGAGTTCTAATGGAGAGCATCCACAAGTCTAAAGCTGAGAAGGCAAGAGAGAAGACCTTATCCGACCAGTTTGAGGCCAAGCGTGCCAAGAACAAGGCCAGCCGAGAAAGGAAGTTTGCTCGCAGGGAGGAGCGTTTTGCTCAAGGTCCTGGAGGAGGAGAGAAGCCAGCAGCAGCTCCTACTGCTGCTCCACCAGCCGAAGTTGCAAAACAAACCCAACCGTCAAAGAAATCCAAGAAGGCCGTGGCAGCTTGA 660 0.5 MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERFAQGPGGGEKPAAAPTAAPPAEVAKQTQPSKKSKKAVAA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05404 219 MobiDBLite consensus disorder prediction 149 219 - -
Vivi6g05404 219 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Vivi6g05404 219 Gene3D - 57 185 - -
Vivi6g05404 219 FunFam Ribosomal protein L19 1 56 - -
Vivi6g05404 219 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vivi6g05404 219 PANTHER 60S RIBOSOMAL PROTEIN L19 1 187 IPR039547 GO:0003723|GO:0003735|GO:0022625
Vivi6g05404 219 MobiDBLite consensus disorder prediction 57 85 - -
Vivi6g05404 219 FunFam Ribosomal protein L19 57 189 - -
Vivi6g05404 219 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Vivi6g05404 219 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vivi6g05404 219 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Vivi6g05404 219 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Vivi6g05404 219 MobiDBLite consensus disorder prediction 149 184 - -
Vivi6g05404 219 MobiDBLite consensus disorder prediction 57 79 - -
Vivi6g05404 219 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05404 Vivi-Chr6 159434106 159436156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05404 1 195 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 89.848 6.60e-129 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05404 K02885 - pop:7493602 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05404 6 159434106 159436156 Vivi6g05404 6 159434106 159436156 ECH