Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05401 ATGCCTTCCTCCGATCCCCATACCGCCGCCGCCACTAATATTGTCCCCAAATGTATCCTCTTCAATGCCGCTTCTGGTGCCTCCGCCGGAGTTATTGCTGCTACGTTTGTGTGTCCTTTAGATGTAATTAAAACTAGGTTTCAGGTTCATGGTGTGCCCAAGTTCACTAATGGAACTGTCAAAGGCAGTGTAATAGTCGGCAGTTTGAAACAGATATTTCACAAGGAGGGGTTACGTGGAATGTACCGTGGACTGGCTCCCACTGTGCTAGCTTTGCTTCCAAATTGGGCTGTTTATTTTACTATGTATGACCAGCTCAAAAGCCTTCTTCATTCTGATGATGAAAACCATCATCACCTTCCAGTTGGAGCTAATATGGTAGCTGCTGCTGGGGCTGGAGCTGCAACTACCTTGTTTACAAATCCACTTTGGGTTGTCAAGACTAGACTTCAAACCCAGGGAATGAGACCTGGTGTTGTGCCATATAAGAGCACACTATCTGCGTTGAGGAGAATTGCGCATGAGGAGGGCATACGGGGGCTGTACAGTGGCCTTGTACCTGCTCTAGCTGGTATCAGTCATGTTGCCATTCAATTCCCGATGTATGAAACAATAAAATTTTATCTAGCAAATCAAGATGACGCAGCAGTTGATAAACTTGGTGCACGTGATGTTGCTATTGCTTCATCAGTCTCCAAAATTTTTGCATCCACATTGACATATCCCCATGAGGTTGTACGTTCCAGATTGCAAGAACAAGGGCATCATTCAGAAAAACGATACTCTGGTATGACAGACTGTATTAGAAAGGTTTTTCAACAAGAAGGCATACCTGGTTTTTACCGAGGATGTGCCACCAACCTTCTGAGGACAACACCAGCTGCCGTAATCACATTCACCAGCTTTGAAATGATACACCGTTTTCTTGTTTCTCATTTTCCTTCTGATCCACAACCTCATATTTTGTGA 969 0.4458 MPSSDPHTAAATNIVPKCILFNAASGASAGVIAATFVCPLDVIKTRFQVHGVPKFTNGTVKGSVIVGSLKQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTMYDQLKSLLHSDDENHHHLPVGANMVAAAGAGAATTLFTNPLWVVKTRLQTQGMRPGVVPYKSTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPMYETIKFYLANQDDAAVDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGMTDCIRKVFQQEGIPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSHFPSDPQPHIL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05401 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 109 IPR018108 -
Vivi6g05401 322 Pfam Mitochondrial carrier protein 120 211 IPR018108 -
Vivi6g05401 322 Pfam Mitochondrial carrier protein 226 311 IPR018108 -
Vivi6g05401 322 Pfam Mitochondrial carrier protein 22 112 IPR018108 -
Vivi6g05401 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 308 IPR018108 -
Vivi6g05401 322 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 21 311 IPR044712 GO:0006862|GO:0055085
Vivi6g05401 322 PRINTS Mitochondrial carrier protein signature 84 104 IPR002067 GO:0055085
Vivi6g05401 322 PRINTS Mitochondrial carrier protein signature 135 153 IPR002067 GO:0055085
Vivi6g05401 322 PRINTS Mitochondrial carrier protein signature 35 49 IPR002067 GO:0055085
Vivi6g05401 322 PRINTS Mitochondrial carrier protein signature 22 35 IPR002067 GO:0055085
Vivi6g05401 322 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Vivi6g05401 322 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 3 115 - -
Vivi6g05401 322 FunFam NAD+ transporter 116 313 - -
Vivi6g05401 322 Gene3D Mitochondrial carrier domain 14 312 IPR023395 -
Vivi6g05401 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 208 IPR018108 -
Vivi6g05401 322 SUPERFAMILY Mitochondrial carrier 21 304 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05401 Vivi-Chr6 159351778 159357573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05401 17 322 Chloroplast and Mitochondria Gene Families AT2G47490 77.778 8.16e-166 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05401 K15115 - gmx:100500213 553.132