Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05399 ATGGATCTTCTTATACTCCTCTCAGTACGCAAGACCCTGGTCCATCCTCCTCTAGATTGGGTGGATGATTCTGAAGAAATAGCTACGAATATACAACGGGCGAAGGTTAAAATGTCTGAGTTAACTAAAGCTCATGCAAAGGCTTTAATGCCTTCTTTTGGCGATGGTAAAGACGATCAGCGGCAGATTGAGACTCTAACTCGGGAAATTACGGCTCTCATTAGAAAGTCTGAAGTGAGGCTGAAAAAACTTTCTGCTGGTAGAGGATCTTCTGAGGAATCTAATGTCAGAAAAAATGTGCAGCGTTCACTTGCTACAGACCTTCAGAGCCTGTCAATGGACCTCCGGCGGAAGCAGTCAGCATATTTGAAACGTTTGCAGAAACAACAAGAGGGTTATGACGGGATTGACTTGGAGATAAACTTTAACGGGAGTAAATCTGGATTGCAGGATGATGGATTCGATGATGTGGGTTTTAGTGAAGCGCAAATGACAAAGCTAAAGAAAAACGAGCACATCTCAGCGGAAAGAGAAAGAGAAATTGATCAGGTCGCTAGTTCAGTCCACGAACTTGCTCAGATCATGAAGGATCTCTCTGTCCTTGTAATAGACCAGGGAACAATTGTAGATAGAATCGACTACAACATTCAGAGCGTTGCTACAACTGTCGAGGAGGGCTTTAAGCAGTTACAAAAGGCGGAAAGAACACAGAAAAAAGGAGGGATGATTACATGTGCAACTGTGCTTGTTATAATGTGCTTTGTCATGCTAGTTCTGTTGATAATCAAGGAGATAATTTTCTAG 804 0.4254 MDLLILLSVRKTLVHPPLDWVDDSEEIATNIQRAKVKMSELTKAHAKALMPSFGDGKDDQRQIETLTREITALIRKSEVRLKKLSAGRGSSEESNVRKNVQRSLATDLQSLSMDLRRKQSAYLKRLQKQQEGYDGIDLEINFNGSKSGLQDDGFDDVGFSEAQMTKLKKNEHISAEREREIDQVASSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATTVEEGFKQLQKAERTQKKGGMITCATVLVIMCFVMLVLLIIKEIIF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05399 267 SMART SynN_4 12 127 IPR006011 GO:0016020
Vivi6g05399 267 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vivi6g05399 267 SUPERFAMILY t-snare proteins 19 226 IPR010989 GO:0016020|GO:0016192
Vivi6g05399 267 Pfam SNARE domain 207 259 IPR000727 -
Vivi6g05399 267 FunFam Syntaxin-43 17 225 - -
Vivi6g05399 267 SMART tSNARE_6 166 233 IPR000727 -
Vivi6g05399 267 Gene3D - 18 225 - -
Vivi6g05399 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Vivi6g05399 267 PANTHER SYNTAXIN 24 253 IPR045242 -
Vivi6g05399 267 CDD SNARE_syntaxin16 175 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05399 Vivi-Chr6 159333599 159339848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05399 17 256 SNARE and Associated Proteins AT3G05710 71.667 1.10e-121 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05399 K08489 - gmx:100803629 411.764