Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05398 ATGGCGACGAGAAACCGAACTGTAGAGTTCAGAAAGTACAGAGACACCGTCAAAAGCTTACGCACTCCTCTTTCTTCATCAGCTTCCGCTTCTTCCGGTGGTCCTGTCATCGAAATGGTTAACACTTCGCTTCTTCGTTCCAATAATGGATCTTCTTATACTCCTCTCAGTACGCAAGACCCTGGTCCATCCTCCTCTAGTGATGCGTTTACTGTGGGTATGCCGCCAGATTGGGTGGATGATTCTGAAGAAATAGCTACGAATATACAACGGGCGAAGGTTAAAATGTCTGAGTTAACTAAAGCTCATGCAAAGGCTTTAATGCCTTCTTTTGGCGATGGTAAAGACGATCAGCGGCAGATTGAGACTCTAACTCGGGAAATTACGGCTCTCATTAGAAAGTCTGAAGTGAGGCTGAAAAAACTTTCTGCTGGTAGAGGATCTTCTGAGGAATCTAATGTCAGAAAAAATGTGCAGCGTTCACTTGCTACAGACCTTCAGAGCCTGTCAATGGACCTCCGGCGGAAGCAGTCAGCATATTTGAAACGTTTGCAGAAACAACAAGAGGGTTATGACGGGATTGACTTGGAGATAAACTTTAACGGGAGTAAATCTGGATTGCAGGATGATGGATTCGATGATGTGGGTTTTAGTGAAGCGCAAATGACAAAGCTAAAGAAAAACGAGCACATCTCAGCGGAAAGAGAAAGAGAAATTGATCAGGTCGCTAGTTCAGTCCACGAACTTGCTCAGATCATGAAGGATCTCTCTGTCCTTGTAATAGACCAGGGAACAATTGTAGATAGAATCGACTACAACATTCAGAGCGTTGCTACAACTGTCGAGGAGGGCTTTAAGCAGTTACAAAAGGCGGAAAGAACACAGAAAAAAGGAGGGATGATTACATGTGCAACTGTGCTTGTTATAATGTGCTTTGTCATGCTAGTTCTGTTGATAATCAAGGAGATAATTTTCTAG 978 0.4356 MATRNRTVEFRKYRDTVKSLRTPLSSSASASSGGPVIEMVNTSLLRSNNGSSYTPLSTQDPGPSSSSDAFTVGMPPDWVDDSEEIATNIQRAKVKMSELTKAHAKALMPSFGDGKDDQRQIETLTREITALIRKSEVRLKKLSAGRGSSEESNVRKNVQRSLATDLQSLSMDLRRKQSAYLKRLQKQQEGYDGIDLEINFNGSKSGLQDDGFDDVGFSEAQMTKLKKNEHISAEREREIDQVASSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATTVEEGFKQLQKAERTQKKGGMITCATVLVIMCFVMLVLLIIKEIIF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05398 325 SMART SynN_4 69 185 IPR006011 GO:0016020
Vivi6g05398 325 PANTHER SYNTAXIN 80 311 IPR045242 -
Vivi6g05398 325 FunFam Syntaxin-43 75 283 - -
Vivi6g05398 325 SUPERFAMILY t-snare proteins 74 284 IPR010989 GO:0016020|GO:0016192
Vivi6g05398 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vivi6g05398 325 CDD SNARE_syntaxin16 233 290 - -
Vivi6g05398 325 Pfam SNARE domain 265 317 IPR000727 -
Vivi6g05398 325 Gene3D - 74 283 - -
Vivi6g05398 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Vivi6g05398 325 MobiDBLite consensus disorder prediction 48 68 - -
Vivi6g05398 325 SMART tSNARE_6 224 291 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05398 Vivi-Chr6 159333599 159340066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05398 1 325 SNARE and Associated Proteins AT4G02195 67.485 4.73e-159 445