Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05393 ATGGATAATTCTGATGCCAAATCTGCTGAAAATCAGCAAACTGAACAAGTGTGTAGTTTCTTCCGAAAACCGGTTAATAAGAAGAATATAAGGAAACGAACGGTTGATAATGAAGATAATGAGGATGACTCGAACAATGGAGGTTCTTTGATGCATGTTCAGAAAAAGACCATGAAGCCCGACAATAAATTGTTCTTTTCCACGGGCTCTTCAAAAAGCTCTAAATCTACTGAAGCGAATGAAGAATCTGAAAAACACGGCTTTCATTTTGAGTCTTCCAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACTGCAACTTTGGAGACTGAGACTGATTTTTCGAAAGATGCTCGTGCCATTCGTGAAAGAGCTCTTAAGCAAGCGTCAGAGAATCTCAAAGGAAAGGGAACTGGCTCAGAGGATGGAAAATTATACAAGGGAATCAATTATTACACAGATCATAAGGCTGGATTTCGTAGAGAGCACACAATTGCTGGTGAAAAGGCCGGTGGGTCACACGGTCCTCTCAGGGCTTCGTCTCACATACGAGTTTCAGCAAGATTTGATTATCAGCCTGATATATGCAAGGATTATAAGGAAACTGGTTACTGTGGGTATGGCGATTCATGTAAATTTATGCATGATCGAGGTGATTACAAATCTGGGTGGCAGATGGAGAAGGAATGGGAAGAAGCTGAGAAATCAAGGAGGATGAGATTGGCTGCAGGTGAGGATGCAGAAGAGGAGGGTGCTAATTTGAATGACGATGATGATTCCGATGATGATTCATTACCATTTGCGTGTTTCATTTGTAGAAATCCATTTGTGGATCCTGTTTCAACCAAGTGCAAACACTACTTCTGTGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTATGCAACCAGCCAACACTTGGCATTTTTAATGTTGCTAATGAGATACGAAAGAAGATGGCTGAGGATAATAAATAA 990 0.403 MDNSDAKSAENQQTEQVCSFFRKPVNKKNIRKRTVDNEDNEDDSNNGGSLMHVQKKTMKPDNKLFFSTGSSKSSKSTEANEESEKHGFHFESSKEIQVQHDSKATATLETETDFSKDARAIRERALKQASENLKGKGTGSEDGKLYKGINYYTDHKAGFRREHTIAGEKAGGSHGPLRASSHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKSRRMRLAAGEDAEEEGANLNDDDDSDDDSLPFACFICRNPFVDPVSTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVANEIRKKMAEDNK 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05393 329 SMART ring_2 269 306 IPR001841 -
Vivi6g05393 329 MobiDBLite consensus disorder prediction 77 98 - -
Vivi6g05393 329 MobiDBLite consensus disorder prediction 237 260 - -
Vivi6g05393 329 Coils Coil 317 329 - -
Vivi6g05393 329 ProSitePatterns Zinc finger RING-type signature. 284 293 IPR017907 -
Vivi6g05393 329 MobiDBLite consensus disorder prediction 1 20 - -
Vivi6g05393 329 PANTHER ZINC FINGER PROTEIN 183 11 328 IPR039971 -
Vivi6g05393 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 326 IPR013083 -
Vivi6g05393 329 SUPERFAMILY CCCH zinc finger 189 221 IPR036855 GO:0046872
Vivi6g05393 329 Gene3D - 188 222 - -
Vivi6g05393 329 MobiDBLite consensus disorder prediction 1 115 - -
Vivi6g05393 329 SMART c3hfinal6 190 217 IPR000571 GO:0046872
Vivi6g05393 329 MobiDBLite consensus disorder prediction 61 76 - -
Vivi6g05393 329 Pfam Zinc finger, C3HC4 type (RING finger) 268 310 - -
Vivi6g05393 329 CDD RING-HC_RNF113A_B 265 315 - -
Vivi6g05393 329 FunFam RING finger protein 113A 267 326 - -
Vivi6g05393 329 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 216 IPR000571 GO:0046872
Vivi6g05393 329 SUPERFAMILY RING/U-box 268 312 - -
Vivi6g05393 329 ProSiteProfiles Zinc finger C3H1-type profile. 190 218 IPR000571 GO:0046872
Vivi6g05393 329 ProSiteProfiles Zinc finger RING-type profile. 269 307 IPR001841 -
Vivi6g05393 329 FunFam Zinc finger CCCH domain-containing protein 1 188 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05393 Vivi-Chr6 159237385 159243904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05393 8 327 C2H2 Transcription Factor Family AT1G01350 68.750 4.54e-162 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi6g05393 zf-C3HC4_3 3.3e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05393 K13127 - gmx:100787434 536.954