Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05350 ATGAGCAGAAATCAAAGCAAAGTGAATTTGATGGAAGAAGTGAAAGGGTACTCTTCTGATAGAGGTGAAGAAGAAGAGGAAGATGAAGGTGCAGAAGAGATGATCACAATTACAGGAGAAGAAAGCAACAACAGCAGCAGGTTACAGACACAGACACATTTACAGACAGCAGCGCAACAAGAGGAAGAAGAAGATGAAGAAACGGTGGTTGGGAATTTGAATGAGAAGAATGAGGAGAGAAAGAAAGAAGAAGATTTGATGGAGTTGAGGCTTGGAGGGAGTGGAAGCAAGAGCAAGAGCATGAGCAAGGAAGAAGGAATAGAGTGTTCGAATTCAAAGAACGAGGAAGAGGTAGAAGAAGAAGTCGAAAAAGAGCACATGTTTGACAAAGTAGTGACACCGAGTGACGTAGGGAAGCTGAATCGACTGGTGATACCGAAGCAACACGCAGAGAAGTACTTCCCTTTGGATTCTTCTACAAACGAGAAAGGGCTTCTTCTCAACTTTGAAGATCGGAATGGAAAAATGTGGCGATTCAGGTACTCGTATTGGAACAGTAGCCAGAGCTATGTGATGACAAAAGGATGGAGCCGTTTTGTTAAAGAGAAGAAGCTTGATGCAGGTGATATTGTTTCGTTTCACCGTGGCCGTGGTGAATCGCACAGACATAGATTGTACATAGATTATAGGCCAAGGTCTCATACTCACTCTCCTTACTCTCAGCATCATCACCACCACCACCACCTCATGCCGCAGTACCCTCCTAACATCGCCACATTGCCTTTTTATCTTCCCAATCATCACTTCTCATCATGCGGCGGTGTTGGTGTTGGTGTGGGTGCTAGATCATTGTACAACTCCTCTCAATATTCACCTCATCTTCCGAATTACTCACCGGCGGCGGCGGCTTCTTCTCCAATACCGCCTCCTCAATATTTCAACAACAATTTCTATACTACACTCCATCAACACCACCAACAACAACAGTACCATTCTTCTGCTGCTGATCACCTTGTTAATAATAATATGAATCCTCTCTTTTACCTCACTTCCTCGCCTATGACGCCGCCAACATCAACAATGGGTGGTGGTGGAGGTGGAGGTGGGGATATTCAACACTTGCCCGGGCCGGGGTCTTGGCAAGGTCAATACCAAGATCAGAGAAATGTAAATGTGAATCTCCCCATGAACATGATAATTGATTCTGTGCCAGTTACACATCACCACCGCAGTGGGAATCCCACCAGTAATAATAATAGCAGCGGAAAACGGCTGAGGCTATTTGGGGTCAACATGGAATGTGACTCTTCTTCATCGTCCTCATCAGCACCACCAAATGTGACAATGGCTAATCAATCACATTCACCCTCTTCAACAACAACGACGACGACGACATCGGGTGGAGATCATCACCGAGGGAGACTTTCGCAGCTCTTTGATTTGGAACCCTTCAATTATCGCCGCCACTGA 1470 0.4551 MSRNQSKVNLMEEVKGYSSDRGEEEEEDEGAEEMITITGEESNNSSRLQTQTHLQTAAQQEEEEDEETVVGNLNEKNEERKKEEDLMELRLGGSGSKSKSMSKEEGIECSNSKNEEEVEEEVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGRGESHRHRLYIDYRPRSHTHSPYSQHHHHHHHLMPQYPPNIATLPFYLPNHHFSSCGGVGVGVGARSLYNSSQYSPHLPNYSPAAAASSPIPPPQYFNNNFYTTLHQHHQQQQYHSSAADHLVNNNMNPLFYLTSSPMTPPTSTMGGGGGGGGDIQHLPGPGSWQGQYQDQRNVNVNLPMNMIIDSVPVTHHHRSGNPTSNNNSSGKRLRLFGVNMECDSSSSSSSAPPNVTMANQSHSPSSTTTTTTTSGGDHHRGRLSQLFDLEPFNYRRH 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05350 489 ProSiteProfiles B3 DNA-binding domain profile. 128 233 IPR003340 GO:0003677
Vivi6g05350 489 SMART B3_2 128 233 IPR003340 GO:0003677
Vivi6g05350 489 MobiDBLite consensus disorder prediction 101 115 - -
Vivi6g05350 489 MobiDBLite consensus disorder prediction 355 383 - -
Vivi6g05350 489 MobiDBLite consensus disorder prediction 433 489 - -
Vivi6g05350 489 FunFam B3 domain-containing protein 121 245 - -
Vivi6g05350 489 Gene3D - 122 248 IPR015300 -
Vivi6g05350 489 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 31 449 IPR044800 GO:0003700
Vivi6g05350 489 MobiDBLite consensus disorder prediction 1 115 - -
Vivi6g05350 489 MobiDBLite consensus disorder prediction 473 489 - -
Vivi6g05350 489 SUPERFAMILY DNA-binding pseudobarrel domain 125 221 IPR015300 -
Vivi6g05350 489 CDD B3_DNA 126 221 IPR003340 GO:0003677
Vivi6g05350 489 MobiDBLite consensus disorder prediction 37 57 - -
Vivi6g05350 489 MobiDBLite consensus disorder prediction 433 471 - -
Vivi6g05350 489 MobiDBLite consensus disorder prediction 70 90 - -
Vivi6g05350 489 Pfam B3 DNA binding domain 128 220 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05350 Vivi-Chr6 158417556 158420252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05350 123 232 B3 DNA Binding Superfamily AT1G01030 87.387 4.84e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi6g05350 B3 7.9e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05350 K09287 - vvo:131612952 791.571