Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05347 ATGGAGGATGCAATTAGGGTTTCATCCCCTTCTTACTGGTTGGATGCTTGCGAAGATATCCCTTGTGACGATTTCATTGATTACCATGTTTCTTCCGTCGTCTCTGACCCCAACCAACAACACCAACAACAATCCATTAACAATAATAATCAAGATTTTTTTGGCGGTATTGATCGAATCTTGGACAGTATCAAGAACGGTGCTGGCCTCCCTCTTACCGTCACTCCGCCACCACCTCTCAGTGATGACGATGCTAACCTCTCTAATGCGAAGAATCAAGGTAACAACACTGATGGTGGTGCTCTTGTTGATCAAGATGAAGAACGGTTCAGCAAACGAGCTCGTGTTAATGTATACGACAATGAGAGAAGAATCAATCATCAAAACAACAGTAATGGTAGCAAGGAGAGGTTTGAGAGGTGTTTCAATGGTAGGAAGAGGCCGAGGGCTCAAGATTTCAAGAAAAGGGATAATTCTTCTAGTGTCAGGAGAGATGTTAGGGGTTATTGGGAGAGGGATAAGTCTTCTGGTTCAAATGATTTGGTGTTTCGGTCGGGAACTTGGGAGCCTGATCGGGTTCGCCAAGATAAAATGATTGTTGATATCAAACAGGAAACTAGTGATGATAAGAATATCGAGCAGGTTAGTAAGGAGAAGGTTGTTCCTGAGGAAAAAGCTAGACAGTATCAATTGGATGTTCTTGAGCAGGCAAAGAGTAGAAATACTATAGCTTTTCTTGAAACTGGAGCTGGGAAAACCCTCATTGCTGTTCTTCTTATTAAATCTATACACGAGACTTTAAATCAGCAGAATAAGAAAATGCTTGCAGTCTTTTTGGTTCCTAAAGTTCCACTTGTTTACCAGCAAGCAGAGGTAATCCGTGAGCGCACAGGATATCAAGTGGGCCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGGGAATTTGACACTAAGCATGTTTTGGTTATGACTGCTCAAATACTTTTGAACATTTTGAGACATAGCATTATAAAAATGGAAGGAATCGATCTCCTGATTCTCGATGAATGCCATCATGCTGTAAAGAAACACCCATATTCCCTGGTGATGTCCGAGTTCTACCATACAACATCCAAAGAAAAGAGGCCATCTGTATTCGGAATGACTGCTTCTCCTGTTAACCTTAAGGGTGTCTCCAGCCAAGTAGACTGTGCAATAAAGATTCGTAATCTTGAAAGTAAGCTAGATTCAACAGTTTGTACCATTAAAGATCGCAAAGAACTGGAGAAACATGTGCCTATGCCCTCTGAAATTGTGGTGGAGTATGATAAAGCGGCCAGTTTGTGTTATTTACATGAGCAAATAAAGCAGATGGAGGCTGAAGTTGAGGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTTGGTGAACTGGGACAGTGGTGTTCATATAAGGTTGCACAATCTTTTCTTGCAGCTCTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTGAGTAAAGTTGTGTCTCTTCTGAAATGTCAACTGTCAGAGGGTGCCGTTTCTGACAAAAACGATGGAGTAGATGACTCAGGTAATAGTGCAGCTCACAATGGGTCTGATGAACCCGAAGAGATTGAAGAAGGAGAGCTTCCGGACAGTCACGTTGTCTCTGGTGGGGAGCATGTGGATGTCATAATAGGTGCTGCCGTGGCCGATGGCAAGGTGACCCCTAAGGTGCAGGCTTTAATCAAAATACTCCTCAAGTATCAGAACACAGACGACTTTCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCGTTAGTTCTACCAAAGGTTTTTGCCGAGCTTCCATCTCTTAGTTTTGTGAAGTGTGCAAGCATGATTGGTCACAACAATAGTCAGGAAATGCGGACCCACCAAATGCATGATACGATTGCCAAGTTCCGTGATGGGCGGGTCACATTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGACAATGTAATGTTGTTATTCGCTTTGATCTTGCAAAGACTGTTCTGGCATACATTCAGTCTAGGGGGCGTGCTAGAAAGCCTGGGTCTGATTACATCCTAATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGGAGAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGATACCCATCCAGAAACAATTTACCAGGTGAAATCCACTGGTGCAGTAGTTAGTTTAAATTCTGCTGTAGGACTTGTCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCCGAATTTATTATGGAGAAGCATGAAAACTCCGGAGGCCCCACTGAATATTCTTGCAGGCTTCAACTGCCATGTAATGCACCATTTGAAAATCTGGAGGGTCCTATCTGCAGTTCAATGCGCTTGGCACAACAGGCTGTTTGTCTAGCTGCTTGCAAAAAATTGCATGAGATGGGAGCATTTACTGACATGTTATTGCCTGATAAAGGAAGTGGGGGAGAAAAAGAAAAGGCTGAGCAAAATGATGAAGGGGATGCACTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCCAATATACTGAAGGGAGAATGGATCTTATCCGGAAAAGATGCTTGCAAGGACTCCAAATTGCTTCATCTTTATTTGTATACCATAAAGTGCGAGAATGTAGGCCAGTCAAAGGATCCGTTCTTGACTCAGGTTTCAGATTTTGCAGTACTTTTTGGCACTGAGCTGGATGCAGAGGTGTTATCGATGTCCATGGATCTATTTATTGCTCGAACCGTGACTACCAAGGCATCTCTTGTCTTTAGAGAGTCAATAGATATCACTGAGAATCAGTTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTCGGCAATAAGTCTTTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAAAATCCCCTACAGAAGGCTCGACCAGATGTTTACCTTGGCACTAATGAGAGAACTTTAGGTGGCGATAGAAGGGAATACGGATTCGGGAAGTTGCGTCATGGCTTGGCTTTTGGGCAGAAGTCACATCCAACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTAGTGAAAGCTTCGGGATTGGTTCCTAACAGAGATTCCGTGCAAACACAAAAGCATATCAACATGACTAGCAAAGGAAAATTGATGATGGCAGATACCTGTACCAGTGCAGATGATCTGGTAGGGAGAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGAAATGTCAGCAGAGAATTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAATACAGTTCATATGCTGATTACTACAAGCAAAAATACGGTGTTGATTTGGTTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTTTGTCCCCTCGATTTGAACACAGTGAAGCACACGAAGGTGAATCCGAAGAGACTCATGACAAAACTTACTATGTTTTCCTTCCTCCCGAGCTATGCTTGGTACATCCACTGCCTGGATCACTCGTTCGTGGTGCTCAGAGACTGCCTTCAATAATGAGGAGGGTTGAAAGCATGCTGCTTGCAGTTCAGCTTAAGAATATGATAAATTATCCTGTTCAGGCTTCAAAGATCTTGGAGGCCTTGACCGCTGCCTCTTGCCAGGAGACATTTTGCTATGAAAGGGCTGAGCTTCTGGGAGATGCTTATCTGAAATGGGTTGTTAGTCGCTTTCTTTTCCTAAAATATCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTAAGTAAAGGTCTTCAATCATATATCCTAGCAGATCGCTTTGCCCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTATTTGATGAAGATACAAAGGATGATGAGTCATCTTTATTTGACCAAGAGAAGTCCATTTGTAAGATTGAGATGATGGATATCACTGATGGGGTTGAGGATGAAATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACCGAGTTCTGTCCAGCAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGAGTGTATTATGTCGAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGTATTCACATAGAGATCGATCCCGATGAGATGGAATGTACAACAAAGCCATCCTGTGTTCCAGACAGCATACTCAGGAGTGTTGATTTCGATGCTTTAGAAGGGGCTCTAAATCTTAAGTTTAAAGACAAGGGTCTGCTGATAGAAGCCATAACTCATGCCTCAAGACCATCCTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGTGATGCTGTGTTGGACCATCTTATAACTAGGCATTTATTTTTCTCATACACAGACCTGCCTCCAGGACGTCTGACTGACCTTCGAGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTACAGTTAAGCACAATCTTCACCTGCATTTGCGACATGGGTCCAGTGCCTTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGAAGAATTATTAAAACCAGGGTTTAACTCGTTTGGTCTTGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTCTTGAATCTATTGCAGGGGCAATTTTTCTTGACAGTGGGAGGAATACTGCTGTCGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTCACACCAGAGACTTTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAGGCCGAAGGTTTGGAGTATAGAGCTAGTCGCGCTGGGAATTTGGCCACTGTTGAAGTATTCATTGATGGAGTGCAAGTAGGGACTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCTAGAAATGCCCTTGCTTCTTTGAAAGAGAAGGAAGTGGACAAAATTCAGGAGAAAAATGATGAAAACGGGACAAAGAATGGGAACCAGACATTTACTAGACAAACATTAAATGACATCTGTTTGCGAAGAAACTGGCCTATGCCATTCTACCGGTGTGTGAGCGAGGGTGGTCCTGCACATGCCAAGAGGTTTACATTTGCAGTGCGCGTGAATACTACTGATAAAGGTTGGACAGGTGAGTGTGTTGGAGAGCCAATGCCAAGTGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAACTAATAAACAAATTATACTCGTGA 5658 0.4328 MEDAIRVSSPSYWLDACEDIPCDDFIDYHVSSVVSDPNQQHQQQSINNNNQDFFGGIDRILDSIKNGAGLPLTVTPPPPLSDDDANLSNAKNQGNNTDGGALVDQDEERFSKRARVNVYDNERRINHQNNSNGSKERFERCFNGRKRPRAQDFKKRDNSSSVRRDVRGYWERDKSSGSNDLVFRSGTWEPDRVRQDKMIVDIKQETSDDKNIEQVSKEKVVPEEKARQYQLDVLEQAKSRNTIAFLETGAGKTLIAVLLIKSIHETLNQQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEGIDLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAASLCYLHEQIKQMEAEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCSYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNDGVDDSGNSAAHNGSDEPEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASMIGHNNSQEMRTHQMHDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRLISVDTHPETIYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMEKHENSGGPTEYSCRLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEKEKAEQNDEGDALPGTARHREFYPEGVANILKGEWILSGKDACKDSKLLHLYLYTIKCENVGQSKDPFLTQVSDFAVLFGTELDAEVLSMSMDLFIARTVTTKASLVFRESIDITENQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGNKSLDPMNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGLAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDSVQTQKHINMTSKGKLMMADTCTSADDLVGRIVTAAHSGKRFYVDSIRYEMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLVYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDDESSLFDQEKSICKIEMMDITDGVEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPDEMECTTKPSCVPDSILRSVDFDALEGALNLKFKDKGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKEFVKEVQEELLKPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRAGNLATVEVFIDGVQVGTAQNPQKKMAQKLAARNALASLKEKEVDKIQEKNDENGTKNGNQTFTRQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFAVRVNTTDKGWTGECVGEPMPSVKKAKDSAAVLLLELINKLYS 1885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05347 1885 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1722 1785 IPR014720 -
Vivi6g05347 1885 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1807 1878 - -
Vivi6g05347 1885 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 633 794 IPR001650 -
Vivi6g05347 1885 FunFam Endoribonuclease dicer-like protein 221 461 - -
Vivi6g05347 1885 Gene3D - 1813 1882 - -
Vivi6g05347 1885 MobiDBLite consensus disorder prediction 124 160 - -
Vivi6g05347 1885 MobiDBLite consensus disorder prediction 908 932 - -
Vivi6g05347 1885 Gene3D Ribonuclease III domain 1326 1522 IPR036389 GO:0004525|GO:0006396
Vivi6g05347 1885 Gene3D Ribonuclease III domain 1544 1717 IPR036389 GO:0004525|GO:0006396
Vivi6g05347 1885 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1807 1882 IPR014720 -
Vivi6g05347 1885 ProSiteProfiles PAZ domain profile. 1165 1305 IPR003100 GO:0005515
Vivi6g05347 1885 Gene3D Dicer dimerisation domain 817 919 IPR038248 -
Vivi6g05347 1885 Pfam Helicase conserved C-terminal domain 630 747 IPR001650 -
Vivi6g05347 1885 Gene3D - 220 464 IPR027417 -
Vivi6g05347 1885 SUPERFAMILY dsRNA-binding domain-like 1811 1880 - -
Vivi6g05347 1885 CDD SF2_C_dicer 627 757 - -
Vivi6g05347 1885 SMART ultradead3 222 425 IPR014001 -
Vivi6g05347 1885 Pfam Type III restriction enzyme, res subunit 229 392 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vivi6g05347 1885 SMART helicmild6 663 749 IPR001650 -
Vivi6g05347 1885 FunFam endoribonuclease Dicer homolog 1 1813 1882 - -
Vivi6g05347 1885 SUPERFAMILY PAZ domain 1185 1305 IPR036085 GO:0005515
Vivi6g05347 1885 MobiDBLite consensus disorder prediction 911 932 - -
Vivi6g05347 1885 ProSiteProfiles Ribonuclease III family domain profile. 1348 1507 IPR000999 GO:0004525|GO:0006396
Vivi6g05347 1885 PANTHER DICER-RELATED 1173 1787 - -
Vivi6g05347 1885 ProSiteProfiles Ribonuclease III family domain profile. 1548 1696 IPR000999 GO:0004525|GO:0006396
Vivi6g05347 1885 MobiDBLite consensus disorder prediction 573 602 - -
Vivi6g05347 1885 SUPERFAMILY RNase III domain-like 1321 1525 IPR036389 GO:0004525|GO:0006396
Vivi6g05347 1885 Pfam Ribonuclease III domain 1362 1507 IPR000999 GO:0004525|GO:0006396
Vivi6g05347 1885 Pfam Ribonuclease III domain 1583 1696 IPR000999 GO:0004525|GO:0006396
Vivi6g05347 1885 SUPERFAMILY RNase III domain-like 1541 1714 IPR036389 GO:0004525|GO:0006396
Vivi6g05347 1885 Pfam Dicer dimerisation domain 822 910 - -
Vivi6g05347 1885 SMART DRBM_3 1723 1784 IPR014720 -
Vivi6g05347 1885 SMART DRBM_3 1808 1881 IPR014720 -
Vivi6g05347 1885 FunFam Endoribonuclease dicer-like 1 817 918 - -
Vivi6g05347 1885 SMART PAZ_2_a_3 1169 1329 IPR003100 GO:0005515
Vivi6g05347 1885 MobiDBLite consensus disorder prediction 85 100 - -
Vivi6g05347 1885 CDD DEXHc_dicer 225 424 - -
Vivi6g05347 1885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 761 IPR027417 -
Vivi6g05347 1885 Gene3D - 620 786 IPR027417 -
Vivi6g05347 1885 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 410 IPR014001 -
Vivi6g05347 1885 CDD DSRM_DCL_plant 1813 1882 - -
Vivi6g05347 1885 CDD RIBOc 1344 1523 IPR000999 GO:0004525|GO:0006396
Vivi6g05347 1885 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 822 917 IPR005034 GO:0016891
Vivi6g05347 1885 FunFam Endoribonuclease dicer-like 1 1543 1717 - -
Vivi6g05347 1885 Gene3D - 1720 1798 - -
Vivi6g05347 1885 FunFam Endoribonuclease Dicer 1 1185 1303 - -
Vivi6g05347 1885 Gene3D paz domain 1183 1303 - -
Vivi6g05347 1885 ProSitePatterns Ribonuclease III family signature. 1583 1591 IPR000999 GO:0004525|GO:0006396
Vivi6g05347 1885 Pfam PAZ domain 1190 1325 IPR003100 GO:0005515
Vivi6g05347 1885 MobiDBLite consensus disorder prediction 129 160 - -
Vivi6g05347 1885 SMART riboneu5 1344 1526 IPR000999 GO:0004525|GO:0006396
Vivi6g05347 1885 SMART riboneu5 1563 1719 IPR000999 GO:0004525|GO:0006396
Vivi6g05347 1885 FunFam Endoribonuclease dicer-like 1 621 783 - -
Vivi6g05347 1885 MobiDBLite consensus disorder prediction 68 102 - -
Vivi6g05347 1885 FunFam Endoribonuclease dicer-like protein 1327 1519 - -
Vivi6g05347 1885 SUPERFAMILY dsRNA-binding domain-like 1678 1806 - -
Vivi6g05347 1885 CDD RIBOc 1564 1719 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05347 Vivi-Chr6 158390441 158401143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05347 646 789 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 6.20e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05347 K11592 - gmx:100811631 3227.96