Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05341 ATGGATGGTGTGGATATTCTTGCTGCTGACTTGTATTTTCTTCCTTGTGTCAAAGTTGCAGGGCTGATATTAAGTTCGGGTTCGAATGCAATTCGGAACTTAACTTCCAGAGGCTTAATTGGAACTATAGCTCCTGCCATATCCAATCTAAAGTCGATTGAATATTTGGATTTGTCAAATAACAGTTTGATTGGGGTTGTGCCTGATTTCCTATCTCAGCTACGCTTCTTGCGAGTTTTAAACCTGGAAAGAAATAAGCTGTCAGGAGCAATTCCAATAGAATTACTTGTGCATCAAGAGAATAGTATGCTCAAATTCAATTTTGGTGGAAATCCAAATCTTTGCTCCTCAGGTTCATGCAACAAAGGGAATGGAAATAAGGTTGTGGTTGCATTAGTTGCATCACTCGGAGGAGCTTTCACGATACTAGCAGTAGCAATAATTTCTTTTCGCATATACTACAAGAGACACCAAGTTTTCCATCGTTTGAGCAAGGTGGGAAGAATAAAGCAGGAACTAGAGTCAAAGAAACAAGAATTCACCTATGAAGAAGTATTAAGCATTACCAGAAACTTTGAAAAGGTTATGGGAAAAGGAGCATCTGGAACAGTCTACCATGGCTGGATTGATGATGAGACTGAGGTAGCTGTCAAAATGCTATCTTCCTCATCAGCTCAAGGATATCTGCAATTTCAAGCAGAGGCCAAACTTTTTGCTATAGTTCATCATAAATACTTAACTGGTCTTATAGGGTATTGTGATGATGGAACCAACATGGCTCTAATCTATGAGTATATGGCTAATGGAGACTTAGCGAATCACGTGTCAGTTCATCCTGAAAGTTGGAATCCAATGTGGTCTGCATCAAGGTCAGAGTGTGCACATTTTGCAGTTCCTTTATGTGGTTTACTCCCTATTGTGTTTTTATTTTTTCTTTGA 939 0.3908 MDGVDILAADLYFLPCVKVAGLILSSGSNAIRNLTSRGLIGTIAPAISNLKSIEYLDLSNNSLIGVVPDFLSQLRFLRVLNLERNKLSGAIPIELLVHQENSMLKFNFGGNPNLCSSGSCNKGNGNKVVVALVASLGGAFTILAVAIISFRIYYKRHQVFHRLSKVGRIKQELESKKQEFTYEEVLSITRNFEKVMGKGASGTVYHGWIDDETEVAVKMLSSSSAQGYLQFQAEAKLFAIVHHKYLTGLIGYCDDGTNMALIYEYMANGDLANHVSVHPESWNPMWSASRSECAHFAVPLCGLLPIVFLFFL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05341 312 Pfam Leucine rich repeat 46 87 IPR001611 GO:0005515
Vivi6g05341 312 Gene3D Ribonuclease Inhibitor 10 108 IPR032675 -
Vivi6g05341 312 Pfam Protein tyrosine and serine/threonine kinase 192 278 IPR001245 GO:0004672|GO:0006468
Vivi6g05341 312 ProSiteProfiles Protein kinase domain profile. 190 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g05341 312 PANTHER OS07G0107800 PROTEIN-RELATED 33 278 - -
Vivi6g05341 312 FunFam Leucine-rich repeat receptor-like kinase 14 117 - -
Vivi6g05341 312 Gene3D Phosphorylase Kinase; domain 1 171 265 - -
Vivi6g05341 312 SUPERFAMILY L domain-like 33 111 - -
Vivi6g05341 312 SUPERFAMILY Protein kinase-like (PK-like) 169 282 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05341 Vivi-Chr6 158309921 158313961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05341 33 276 Receptor kinase-like Gene Family AT2G19210 49.597 1.36e-65 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vivi6g05341 PK_Tyr_Ser-Thr 6e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05341 - - vvo:131615123 617.846