Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05340 ATGGCGCAACAAGAGTTACAAGATGAAGAAAGTTTCTCTTACGCCGTTCAGCTCAGCAACTCCGTCGTTCTTTCCATGGCACTTCATTCCGCCACCGAACTCGGCGTTTTCCAAGTCTTACAAAACTCCGATTCTAATTCTCCACTCTCCGCCGCCGAGATTGCCTCTCGTCTCTCATGCACTAATCCAGAAGCTCCGAAAATGTTAGATCGAATTCTCGCTCTTCTTGCTTCTCACTCTGTGCTTAACTGCTCCGTTGTTCCTGATCAGCAAAACCTTGGATCGTTTGATAGACTCTATAGTATCACTCCTGTTGCAAAATTCTTTGCTCCTAATTCTGATGGTGTTTCGTTAGCTCCGTTGATTGCATTGCATCAGGATAAAATCTTCTTAGAAAGCTGGTCTCAGCTTAAAGATTCAATTCGGGAAGGGGGTATTCCATTCAACAGGGTTCATGGTACACATGCCTTCGAGTATCCCAGGGTGGACTCCAGATTCAATCAAGTTTTCAATACAGCGATGATCAATCACTCCACTTTGATAATGAAGAAGGTACTTGAATGCTACAAAGGATTTGAAGAGGTAAAAAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATCAGCATTAATTTGATCACTTCAAAATACCCTCATATAAAGGGTATCAATTTCGACTTGCCTCATGTCATTGAACACGCCCCTTCCTATCCTGGTGTTGAACACGTTGGCGGAGATATGTTTGAAACTGTGCCTAAAGCAGATGCCATATTTATGAAGTGGATACTTCATGACTGGAGTGATGAGCGGTGCTTGAAGCTTTTGAAGAATTGCTATGATGCTATTCCTGATGATGGAAAGGTGATTGTTTTGGAGACAGTTATGTCTATTATACCAGAAAATAATGCTGCTTGGAAGTTTGCAGCTCAATCGGATGTTCTGATGATGACTCAAAATCCTGGTGGGAAAGAGCGAACTGAGCAAGAATTCATGGATTTAGCAAATGGAGCTGGATTTCGTGGCATTAGATATGAATGTTATGTTAATACTTTTTGGGTTATGGAGTTCTTTAAGTAG 1074 0.4218 MAQQELQDEESFSYAVQLSNSVVLSMALHSATELGVFQVLQNSDSNSPLSAAEIASRLSCTNPEAPKMLDRILALLASHSVLNCSVVPDQQNLGSFDRLYSITPVAKFFAPNSDGVSLAPLIALHQDKIFLESWSQLKDSIREGGIPFNRVHGTHAFEYPRVDSRFNQVFNTAMINHSTLIMKKVLECYKGFEEVKRLVDVGGGLGISINLITSKYPHIKGINFDLPHVIEHAPSYPGVEHVGGDMFETVPKADAIFMKWILHDWSDERCLKLLKNCYDAIPDDGKVIVLETVMSIIPENNAAWKFAAQSDVLMMTQNPGGKERTEQEFMDLANGAGFRGIRYECYVNTFWVMEFFK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05340 357 SUPERFAMILY "Winged helix" DNA-binding domain 7 112 IPR036390 -
Vivi6g05340 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 16 357 IPR016461 GO:0008168
Vivi6g05340 357 FunFam Caffeic acid O-methyltransferase 110 357 - -
Vivi6g05340 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 355 IPR029063 -
Vivi6g05340 357 Gene3D Vaccinia Virus protein VP39 111 357 IPR029063 -
Vivi6g05340 357 Pfam O-methyltransferase domain 134 339 IPR001077 GO:0008171
Vivi6g05340 357 Gene3D - 1 109 IPR036388 -
Vivi6g05340 357 FunFam Caffeic acid 3-O-methyltransferase 1 109 - -
Vivi6g05340 357 PANTHER O-METHYLTRANSFERASE 18 342 IPR016461 GO:0008168
Vivi6g05340 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Vivi6g05340 357 Pfam Dimerisation domain 26 77 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05340 Vivi-Chr6 158290140 158294472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05340 5 357 Monolignol Biosynthesis Gene Families AT5G54160 53.672 7.48e-142 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05340 K13066 - gmx:100803633 586.645