Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05339 ATGGCTTCTAATAACCAACATTCCAACGGAAATGACAATGATGCCCTCGGGTTTGTCACACAAGTAACAGGTTCAATTGTTCTTCCGTTGGCTTTACGAACAACCATTGATCTTGGTGTCTTTGAAATCCTAGCCAAAGCTGGGAATGGTGCGGAACTATCTGCTGAAGACATTGCAATTAAGATTGGAACCAAAAATCCAGAAGGGCCAACGATGTTGGACCGTGTTCTTTGCTTCTTGTCAAGTCATTCTATTCTAAATGCATCTGTTCCTCAACATCCTCAAAGTTTACAAAGATTCTATAGTCTCGCCAACCGGTCCAGGTTTTTCGTCCCCGATTCCGATGGCGTCTCGTTGGGACCAACATTAGCATTGCTTCTCGACAACGTCTTCTACCAAAGCTGGACGGAGTTGAAAGGAGCGATTATGGAAGGAGGTGTACCGTTTGATAGGGTTCATGGAATGCATGCATTTGAGTATCCACGTGTGGATCCAAAGTTCAATGATGTTTTCAACAAAGCTATGGTTTGCTCAACTACTATAAATATGAAGATGGTTCTTAATTGTTATAATGGTTTTGAGAATATAAATAAGCTAGTTGATGTTGGTGGAGGTCTTGGTATTAATCTCAAATTAGTTACATCAAAATATTCTCACATTAAAGGAATTAATTTCGATTTGCCTCATGTAGTAGAACTTGCACCTTCCTACCCCGGTGTGGAACATGTGGGAGGAGATATGTTCGAGAGTGTTCCTTCGGGAGATGCAATTTTTATGAAGTGGATACTTCATGATTGGAGTGACGAACATTGTTTGAAGTTATTGAAAAATTGTTACAAAGCAATTCCTGAAGATGGGAAGGTTATTGTGGTGGAAACAGTTCTTCCTATATTGCCAGAGACAAGTGCAATGGCTAAGAATGGTTACATGGTGGATCTTATAATGCTGACACAAAATCCAGGAGGGAAAGAGAGAAATGAGAATGAATTTATGGAGTTAGCAAAAGGATCTGGATTTAGTGGTGTCAAACATGTATGTTCTGTGTCTGGATTAGTGGTTATGGAGTTCTATAAATAG 1077 0.3993 MASNNQHSNGNDNDALGFVTQVTGSIVLPLALRTTIDLGVFEILAKAGNGAELSAEDIAIKIGTKNPEGPTMLDRVLCFLSSHSILNASVPQHPQSLQRFYSLANRSRFFVPDSDGVSLGPTLALLLDNVFYQSWTELKGAIMEGGVPFDRVHGMHAFEYPRVDPKFNDVFNKAMVCSTTINMKMVLNCYNGFENINKLVDVGGGLGINLKLVTSKYSHIKGINFDLPHVVELAPSYPGVEHVGGDMFESVPSGDAIFMKWILHDWSDEHCLKLLKNCYKAIPEDGKVIVVETVLPILPETSAMAKNGYMVDLIMLTQNPGGKERNENEFMELAKGSGFSGVKHVCSVSGLVVMEFYK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05339 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168
Vivi6g05339 358 FunFam Caffeic acid O-methyltransferase 111 358 - -
Vivi6g05339 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 356 IPR029063 -
Vivi6g05339 358 Gene3D Vaccinia Virus protein VP39 168 348 IPR029063 -
Vivi6g05339 358 Gene3D - 27 186 IPR036388 -
Vivi6g05339 358 Pfam Dimerisation domain 31 80 IPR012967 GO:0046983
Vivi6g05339 358 PANTHER O-METHYLTRANSFERASE 23 356 IPR016461 GO:0008168
Vivi6g05339 358 Pfam O-methyltransferase domain 135 340 IPR001077 GO:0008171
Vivi6g05339 358 SUPERFAMILY "Winged helix" DNA-binding domain 11 113 IPR036390 -
Vivi6g05339 358 FunFam Caffeic acid 3-O-methyltransferase 2 110 - -
Vivi6g05339 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05339 Vivi-Chr6 158267037 158268796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05339 11 358 Monolignol Biosynthesis Gene Families AT5G54160 52.149 1.19e-132 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05339 K13066 - gmx:100789402 490.345