Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05336 ATGGGTGAGGTGGTGGTGAATGCTTCGATGCAGAGTGATAATGGTAAATGGGAGAATTTTCTTCCTCCGACGATGCTCAGGGTTTTGCTAGTTGAGCCTGATGATTCTACTCGGCACATTATTTCAGCACTTCTTCGTAAATGCGGTTACAAAGTTGCTGCGGTTCGAGATGGCTTAAAGGCATGGGAAACATTGAAGAACAAATCATGTGATATAGATATTGTATTAACAGAAGTAGATGTGCCAACAATATCTGGTTTTTCATTGCTTACTTCAATCATGGAGCATGACAATTGCAAAAAAATTCCTGTCATAATGATGTCATCTCATGATTCAGTTAGCACGGTGTTCAAATGTATGCAAAATGGGGCCGTTGATTTTCTCATTAAACCTGTTCGCAGGAACGAGCTAAGGAACTTGTGGCAGCACGTGTGGAGAAGACATACTATTAGCAAGCCTCCTCAAAATATAACATTGGCACATGATAAACTTGATGTTGCTGAAGAAAACAATACTGCAAGCAATAATCCTAGTGGTTCTGTTGCTTCCACGCAGAAAATCGAATGCAGTGGAAAAAATAGTGAGGCTCAAGCTCAAGATACGTCCCAGCTGAAGAGTTCTTCGAGTTTGAGCGAGACAGACCAGGTGAAGCACGAAAATTCTACCAAATATGAATGGGAGTCTACTGAGTATAATGACGAAACTGGAGAGAAATCAACTTTAACAGCATCTAAAGCTGCAGGGTGTGGCAAAATTTCAACAGGTTTAAGGCTAGGTCAAAGCTATGAATATAATGAAACAGAAAACCAAGATGAAGAAGGGTTAAGAACAGGGTTAGGCAAAGCCAATCCTCATGTTAATACAAAGATTCATCGACGCAATGATGAACTAGAAGAACCTTCTGTTGGAGCTATTGACTTGATGGCTACTTTTGAGAATCTTCCTAAGAGCAGTTATGCAGATTGTAGTTTCAACGGTGGTAACACAGCCAAGTTAGAATATGATACACAATTGAAACTTTCATTACAGAGAGATTATCCTGGCAGCTCATCTAAACCTACCACTGAGGAAAGGCAAATATTGAATCATTCAAATGCTTCTCCATTTTCTCGGTATGGCAACTGTATGTTGTTGCAGCCTTTTTTTCCAACAAATAATTCTTATGAATCACAAAAGTTATCTGAAAATACAAATACTAATCAGTGTGATGGAAAAAACCAAAAAGAGGAAAGTAACACCTATCTGGTGATTGGTCAATCTGTACAAGATGATGCAAAATTTCTGAACCGTCAACATGAATTCTTTCCAGCCAACACCGGGGACACTTCTGATAACAAGTCTATGGAACATGATACTGTTTTTAATTCTATAAGCAACGCACAGTCAGACACGAATCCCACATGGAAACCAAAATCAATGTTCCAAAAAGAAAGTTCTCCATTTCCCACAAGTATTTCCTCCCATTCCAATCCTAAAAGTCAGAACTCAGAAGCTCATCAATGGTCGGATAACACCACCTATACTTGTGATCAAAACAAAAATGATCAAAGTAATATTGATTGTTCTATGCATGAATCTCCATCTAATGGTCAAAGTTGTGGTACTAGCTTTTACCATGATGCAGAAAATCGCAACACTAGTGGTGTGTGTGAAGGCACAGGCAGCGGGAGTGATGGAAATGCCCCTCTATCTGTTGCAGCCAAGAATCATCTTGAAAGTTCTATTAGTAATGATCACTATGGCGAGCTTAGAGGCGCAAATTCTCACTGCACCAGCCATAGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGAAAAGACAGATGCTATGACAAAAAGGTCCGATATGAAAGCCGGAAAAGACAAGCAGATAAACGTCCCAGGGTGAAAGGGCAGTTTGTTCGACAAGTACAAAGTGAACTCGTGGTTGGTACCGGAGGTTACTGA 1947 0.4006 MGEVVVNASMQSDNGKWENFLPPTMLRVLLVEPDDSTRHIISALLRKCGYKVAAVRDGLKAWETLKNKSCDIDIVLTEVDVPTISGFSLLTSIMEHDNCKKIPVIMMSSHDSVSTVFKCMQNGAVDFLIKPVRRNELRNLWQHVWRRHTISKPPQNITLAHDKLDVAEENNTASNNPSGSVASTQKIECSGKNSEAQAQDTSQLKSSSSLSETDQVKHENSTKYEWESTEYNDETGEKSTLTASKAAGCGKISTGLRLGQSYEYNETENQDEEGLRTGLGKANPHVNTKIHRRNDELEEPSVGAIDLMATFENLPKSSYADCSFNGGNTAKLEYDTQLKLSLQRDYPGSSSKPTTEERQILNHSNASPFSRYGNCMLLQPFFPTNNSYESQKLSENTNTNQCDGKNQKEESNTYLVIGQSVQDDAKFLNRQHEFFPANTGDTSDNKSMEHDTVFNSISNAQSDTNPTWKPKSMFQKESSPFPTSISSHSNPKSQNSEAHQWSDNTTYTCDQNKNDQSNIDCSMHESPSNGQSCGTSFYHDAENRNTSGVCEGTGSGSDGNAPLSVAAKNHLESSISNDHYGELRGANSHCTSHREAALTKFRLKRKDRCYDKKVRYESRKRQADKRPRVKGQFVRQVQSELVVGTGGY 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05336 648 MobiDBLite consensus disorder prediction 169 239 - -
Vivi6g05336 648 MobiDBLite consensus disorder prediction 216 234 - -
Vivi6g05336 648 SMART REC_2 26 141 IPR001789 GO:0000160
Vivi6g05336 648 MobiDBLite consensus disorder prediction 388 407 - -
Vivi6g05336 648 MobiDBLite consensus disorder prediction 169 215 - -
Vivi6g05336 648 MobiDBLite consensus disorder prediction 457 501 - -
Vivi6g05336 648 MobiDBLite consensus disorder prediction 344 365 - -
Vivi6g05336 648 Pfam CCT motif 594 636 IPR010402 GO:0005515
Vivi6g05336 648 ProSiteProfiles CCT domain profile. 594 636 IPR010402 GO:0005515
Vivi6g05336 648 Gene3D - 26 246 - -
Vivi6g05336 648 Pfam Response regulator receiver domain 28 139 IPR001789 GO:0000160
Vivi6g05336 648 SUPERFAMILY CheY-like 24 154 IPR011006 -
Vivi6g05336 648 ProSiteProfiles Response regulatory domain profile. 27 145 IPR001789 GO:0000160
Vivi6g05336 648 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 365 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05336 Vivi-Chr6 158231585 158236486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05336 295 639 Response Regulator Gene Family AT5G24470 29.775 6.59e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vivi6g05336 Response_reg 2.4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05336 K12130 - gmx:100779346 719.924